############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BASiCS.buildbin-libdir && mkdir BASiCS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BASiCS.buildbin-libdir BASiCS_2.6.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'BASiCS' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BASiCS.cpp -o BASiCS.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BASiCS.dll tmp.def BASiCS.o RcppExports.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BASiCS.buildbin-libdir/00LOCK-BASiCS/00new/BASiCS/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BASiCS' finding HTML links ... done BASiCS-defunct html BASiCS_Chain-methods html BASiCS_Chain html BASiCS_CorrectOffset html BASiCS_DenoisedCounts html finding level-2 HTML links ... done BASiCS_DenoisedRates html BASiCS_DetectVG html BASiCS_DiagHist html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/BASiCS.buildbin-libdir/00LOCK-BASiCS/00new/BASiCS/help/BASiCS_diagHist.html BASiCS_DiagPlot html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/BASiCS.buildbin-libdir/00LOCK-BASiCS/00new/BASiCS/help/BASiCS_diagPlot.html BASiCS_DivideAndConquer html BASiCS_Draw html BASiCS_EffectiveSize html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/BASiCS.buildbin-libdir/00LOCK-BASiCS/00new/BASiCS/help/BASiCS_effectiveSize.html BASiCS_Filter html BASiCS_LoadChain html BASiCS_MCMC html BASiCS_MockSCE html BASiCS_PlotDE html BASiCS_PlotOffset html BASiCS_PlotVG html BASiCS_PriorParam html BASiCS_Result html BASiCS_ResultDE html BASiCS_ResultVG html BASiCS_ResultsDE html BASiCS_ShowFit html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/BASiCS.buildbin-libdir/00LOCK-BASiCS/00new/BASiCS/help/BASiCS_showFit.html BASiCS_Sim html BASiCS_Summary-methods html BASiCS_Summary html BASiCS_TestDE html BASiCS_VarThresholdSearchHVG_LVG html BASiCS_VarianceDecomp html ChainRNA html ChainRNAReg html ChainSC html ChainSCReg html Summary-BASiCS_Chain-method html as.data.frame-methods html dim-BASiCS_Chain-method html dimnames-BASiCS_Chain-method html displayChainBASiCS-BASiCS_Chain-method html displaySummaryBASiCS-BASiCS_Summary-method html dot-generateSubsets html format-methods html makeExampleBASiCS_Data html newBASiCS_Chain html newBASiCS_Data html plot-BASiCS_Chain-method html plot-BASiCS_Summary-method html rowData html show-BASiCS_ResultDE-method html show-BASiCS_ResultVG-method html show-BASiCS_ResultsDE-method html subset-BASiCS_Chain-method html subset-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BASiCS' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BASiCS.cpp -o BASiCS.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BASiCS.dll tmp.def BASiCS.o RcppExports.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BASiCS.buildbin-libdir/BASiCS/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BASiCS' as BASiCS_2.6.0.zip * DONE (BASiCS)