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CHECK report for zebrafishRNASeq on riesling1

This page was generated on 2021-01-14 15:59:13 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE zebrafishRNASeq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 385/385HostnameOS / ArchINSTALLBUILDCHECK
zebrafishRNASeq 1.11.0
Davide Risso
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/zebrafishRNASeq
Branch: master
Last Commit: c9e148a
Last Changed Date: 2020-10-27 10:09:13 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: zebrafishRNASeq
Version: 1.11.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:zebrafishRNASeq.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings zebrafishRNASeq_1.11.0.tar.gz
StartedAt: 2021-01-14 11:47:50 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:48:07 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 16.7 seconds
RetCode: 0
Status:  OK  
CheckDir: zebrafishRNASeq.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:zebrafishRNASeq.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings zebrafishRNASeq_1.11.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/zebrafishRNASeq.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'zebrafishRNASeq/DESCRIPTION' ... OK
* this is package 'zebrafishRNASeq' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'zebrafishRNASeq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

zebrafishRNASeq.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/zebrafishRNASeq_1.11.0.tar.gz && rm -rf zebrafishRNASeq.buildbin-libdir && mkdir zebrafishRNASeq.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zebrafishRNASeq.buildbin-libdir zebrafishRNASeq_1.11.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL zebrafishRNASeq_1.11.0.zip && rm zebrafishRNASeq_1.11.0.tar.gz zebrafishRNASeq_1.11.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
  7  211k    7 15817    0     0  10036      0  0:00:21  0:00:01  0:00:20 10029
100  211k  100  211k    0     0   130k      0  0:00:01  0:00:01 --:--:--  130k

install for i386

* installing *source* package 'zebrafishRNASeq' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'zebrafishRNASeq'
    finding HTML links ... done
    zfGenes                                 html  
REDIRECT:topic	 zfGenes -> zfGenes.html [ SUCCESS ]
REDIRECT:topic	 zebrafishRNASeq -> zfGenes.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'zebrafishRNASeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zebrafishRNASeq' as zebrafishRNASeq_1.11.0.zip
* DONE (zebrafishRNASeq)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'zebrafishRNASeq' successfully unpacked and MD5 sums checked

Tests output


Example timings