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CHECK report for yeastRNASeq on riesling1

This page was generated on 2021-01-14 15:59:12 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE yeastRNASeq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 383/385HostnameOS / ArchINSTALLBUILDCHECK
yeastRNASeq 0.29.0
J. Bullard
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/yeastRNASeq
Branch: master
Last Commit: cc19a70
Last Changed Date: 2020-10-27 09:51:20 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: yeastRNASeq
Version: 0.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:yeastRNASeq.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings yeastRNASeq_0.29.0.tar.gz
StartedAt: 2021-01-14 11:47:37 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:51:00 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 202.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: yeastRNASeq.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:yeastRNASeq.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings yeastRNASeq_0.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/yeastRNASeq.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'yeastRNASeq/DESCRIPTION' ... OK
* this is package 'yeastRNASeq' version '0.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'yeastRNASeq' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 313.6Mb
  sub-directories of 1Mb or more:
    data    62.7Mb
    reads  250.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                    old_size new_size compress
  geneLevelData.rda     68Kb     43Kb    bzip2
  yeastAligned.rda    62.6Mb   44.4Mb       xz
  yeastAnno.rda         80Kb     57Kb       xz
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/yeastRNASeq.Rcheck/00check.log'
for details.



Installation output

yeastRNASeq.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/yeastRNASeq_0.29.0.tar.gz && rm -rf yeastRNASeq.buildbin-libdir && mkdir yeastRNASeq.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=yeastRNASeq.buildbin-libdir yeastRNASeq_0.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL yeastRNASeq_0.29.0.zip && rm yeastRNASeq_0.29.0.tar.gz yeastRNASeq_0.29.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  306M    0  702k    0     0  1761k      0  0:02:58 --:--:--  0:02:58 1761k
  0  306M    0 1486k    0     0  1044k      0  0:05:00  0:00:01  0:04:59 1044k
  3  306M    3 11.5M    0     0  5011k      0  0:01:02  0:00:02  0:01:00 5011k
 14  306M   14 43.6M    0     0  12.9M      0  0:00:23  0:00:03  0:00:20 12.9M
 35  306M   35  108M    0     0  24.9M      0  0:00:12  0:00:04  0:00:08 24.9M
 56  306M   56  173M    0     0  32.3M      0  0:00:09  0:00:05  0:00:04 34.8M
 73  306M   73  226M    0     0  34.8M      0  0:00:08  0:00:06  0:00:02 44.2M
 84  306M   84  260M    0     0  35.3M      0  0:00:08  0:00:07  0:00:01 49.6M
100  306M  100  306M    0     0  36.7M      0  0:00:08  0:00:08 --:--:-- 52.8M

install for i386

* installing *source* package 'yeastRNASeq' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'yeastRNASeq'
    finding HTML links ... done
    geneLevelData                           html  
REDIRECT:topic	 geneLevelData -> geneLevelData.html [ SUCCESS ]
    yeastAligned                            html  
REDIRECT:topic	 yeastAligned -> yeastAligned.html [ SUCCESS ]
    yeastAnno                               html  
REDIRECT:topic	 yeastAnno -> yeastAnno.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'yeastRNASeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'yeastRNASeq' as yeastRNASeq_0.29.0.zip
* DONE (yeastRNASeq)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'yeastRNASeq' successfully unpacked and MD5 sums checked

Tests output


Example timings