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CHECK report for yeastNagalakshmi on riesling1

This page was generated on 2021-01-14 15:59:12 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE yeastNagalakshmi PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 382/385HostnameOS / ArchINSTALLBUILDCHECK
yeastNagalakshmi 1.27.0
Bioconductor Package Maintainer
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/yeastNagalakshmi
Branch: master
Last Commit: e549493
Last Changed Date: 2020-10-27 09:53:36 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: yeastNagalakshmi
Version: 1.27.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:yeastNagalakshmi.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings yeastNagalakshmi_1.27.0.tar.gz
StartedAt: 2021-01-14 11:47:34 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:47:51 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 16.9 seconds
RetCode: 0
Status:  OK  
CheckDir: yeastNagalakshmi.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:yeastNagalakshmi.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings yeastNagalakshmi_1.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/yeastNagalakshmi.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'yeastNagalakshmi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'yeastNagalakshmi' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'yeastNagalakshmi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 15.0Mb
  sub-directories of 1Mb or more:
    extdata  14.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/yeastNagalakshmi.Rcheck/00check.log'
for details.



Installation output

yeastNagalakshmi.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/yeastNagalakshmi_1.27.0.tar.gz && rm -rf yeastNagalakshmi.buildbin-libdir && mkdir yeastNagalakshmi.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=yeastNagalakshmi.buildbin-libdir yeastNagalakshmi_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL yeastNagalakshmi_1.27.0.zip && rm yeastNagalakshmi_1.27.0.tar.gz yeastNagalakshmi_1.27.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 14.3M    0 14354    0     0  66762      0  0:03:44 --:--:--  0:03:44 66762
  0 14.3M    0 15814    0     0  14094      0  0:17:45  0:00:01  0:17:44 14081
  1 14.3M    1  216k    0     0   101k      0  0:02:24  0:00:02  0:02:22  101k
  3 14.3M    3  463k    0     0   148k      0  0:01:38  0:00:03  0:01:35  148k
  7 14.3M    7 1140k    0     0   245k      0  0:00:59  0:00:04  0:00:55  245k
  7 14.3M    7 1157k    0     0   198k      0  0:01:13  0:00:05  0:01:08  203k
 10 14.3M   10 1555k    0     0   243k      0  0:01:00  0:00:06  0:00:54  292k
 15 14.3M   15 2328k    0     0   296k      0  0:00:49  0:00:07  0:00:42  369k
 20 14.3M   20 3070k    0     0   369k      0  0:00:39  0:00:08  0:00:31  503k
100 14.3M  100 14.3M    0     0  1653k      0  0:00:08  0:00:08 --:--:-- 3208k

install for i386

* installing *source* package 'yeastNagalakshmi' ...
** using staged installation
** inst
** help
*** installing help indices
  converting help for package 'yeastNagalakshmi'
    finding HTML links ... done
    yeastNagalakshmi-package                html  
REDIRECT:topic	 yeastNagalakshmi-package -> yeastNagalakshmi-package.html [ SUCCESS ]
REDIRECT:topic	 yeastNagalakshmi -> yeastNagalakshmi-package.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'yeastNagalakshmi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'yeastNagalakshmi' as yeastNagalakshmi_1.27.0.zip
* DONE (yeastNagalakshmi)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'yeastNagalakshmi' successfully unpacked and MD5 sums checked

Tests output


Example timings

yeastNagalakshmi.Rcheck/examples_i386/yeastNagalakshmi-Ex.timings

nameusersystemelapsed
yeastNagalakshmi-package000

yeastNagalakshmi.Rcheck/examples_x64/yeastNagalakshmi-Ex.timings

nameusersystemelapsed
yeastNagalakshmi-package000