Back to Multiple platform build/check report for BioC 3.13 experimental data
ABCDEFGHIJKLMNOPQRSTUVWX[Y]Z

CHECK report for yeastGSData on riesling1

This page was generated on 2021-01-21 16:01:40 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE yeastGSData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 382/386HostnameOS / ArchINSTALLBUILDCHECK
yeastGSData 0.29.0
R. Gentleman
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/yeastGSData
Branch: master
Last Commit: 73a4849
Last Changed Date: 2020-10-27 09:48:41 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: yeastGSData
Version: 0.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:yeastGSData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings yeastGSData_0.29.0.tar.gz
StartedAt: 2021-01-21 11:53:13 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:54:36 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 83.4 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: yeastGSData.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:yeastGSData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings yeastGSData_0.29.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/yeastGSData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'yeastGSData/DESCRIPTION' ... OK
* this is package 'yeastGSData' version '0.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'yeastGSData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 65.2Mb
  sub-directories of 1Mb or more:
    extdata  64.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  BayesFactorNGS.rda     46Kb     18Kb       xz
  BayesFactorPGS.rda     70Kb     32Kb       xz
  MIPSGS.rda             15Kb      9Kb       xz
  Mpact.rda             199Kb    136Kb    bzip2
  NEGGS.rda             600Kb     40Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/yeastGSData.Rcheck/00check.log'
for details.



Installation output

yeastGSData.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/yeastGSData_0.29.0.tar.gz && rm -rf yeastGSData.buildbin-libdir && mkdir yeastGSData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=yeastGSData.buildbin-libdir yeastGSData_0.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL yeastGSData_0.29.0.zip && rm yeastGSData_0.29.0.tar.gz yeastGSData_0.29.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 8207k    0  7055    0     0  18043      0  0:07:45 --:--:--  0:07:45 17997
 22 8207k   22 1830k    0     0  1382k      0  0:00:05  0:00:01  0:00:04 1381k
 52 8207k   52 4324k    0     0  1852k      0  0:00:04  0:00:02  0:00:02 1852k
100 8207k  100 8207k    0     0  2576k      0  0:00:03  0:00:03 --:--:-- 2576k

install for i386

* installing *source* package 'yeastGSData' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'yeastGSData'
    finding HTML links ... done
    BayesFactorNGS                          html  
REDIRECT:topic	 BayesFactorNGS -> BayesFactorNGS.html [ SUCCESS ]
    BayesFactorPGS                          html  
REDIRECT:topic	 BayesFactorPGS -> BayesFactorPGS.html [ SUCCESS ]
    BinaryGS                                html  
REDIRECT:topic	 BinaryGS -> BinaryGS.html [ SUCCESS ]
    MIPSGS                                  html  
REDIRECT:topic	 MIPSGS -> MIPSGS.html [ SUCCESS ]
    Mpact                                   html  
REDIRECT:topic	 Mpact -> Mpact.html [ SUCCESS ]
    MpactEvidenceCodes                      html  
REDIRECT:topic	 MpactEvidenceCodes -> MpactEvidenceCodes.html [ SUCCESS ]
    NEGGS                                   html  
REDIRECT:topic	 NEGGS -> NEGGS.html [ SUCCESS ]
    POSPS                                   html  
REDIRECT:topic	 POSPS -> POSPS.html [ SUCCESS ]
    PRS                                     html  
REDIRECT:topic	 PRS -> PRS.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'yeastGSData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'yeastGSData' as yeastGSData_0.29.0.zip
* DONE (yeastGSData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'yeastGSData' successfully unpacked and MD5 sums checked

Tests output


Example timings

yeastGSData.Rcheck/examples_i386/yeastGSData-Ex.timings

nameusersystemelapsed
BayesFactorNGS0.010.000.01
BayesFactorPGS000
BinaryGS000
MIPSGS0.010.000.02
Mpact0.040.010.04
MpactEvidenceCodes000
NEGGS2.620.062.69
POSPS000
PRS000

yeastGSData.Rcheck/examples_x64/yeastGSData-Ex.timings

nameusersystemelapsed
BayesFactorNGS0.010.000.02
BayesFactorPGS0.020.000.01
BinaryGS000
MIPSGS000
Mpact0.010.020.03
MpactEvidenceCodes000
NEGGS2.290.112.39
POSPS000
PRS0.000.010.01