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CHECK report for topdownrdata on riesling1

This page was generated on 2021-01-21 16:01:40 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE topdownrdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 372/386HostnameOS / ArchINSTALLBUILDCHECK
topdownrdata 1.13.0
Sebastian Gibb
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/topdownrdata
Branch: master
Last Commit: ed158f8
Last Changed Date: 2020-10-27 10:24:28 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: topdownrdata
Version: 1.13.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:topdownrdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings topdownrdata_1.13.0.tar.gz
StartedAt: 2021-01-21 11:52:15 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:54:30 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 135.8 seconds
RetCode: 0
Status:  OK  
CheckDir: topdownrdata.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:topdownrdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings topdownrdata_1.13.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/topdownrdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'topdownrdata/DESCRIPTION' ... OK
* this is package 'topdownrdata' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170629_myo/experiments/myo_1211_ETDReagentTarget_5e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_563_ETDReagentTarget_5e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_691_ETDReagentTarget_5e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e6_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e7_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_1e7_2.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_5e6_1.experiments.csv.gz
  topdownrdata/inst/extdata/20170705_h3_3/experiments/h3_3_894_ETDReagentTarget_5e6_2.experiments.csv.gz

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'topdownrdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.8Mb
  sub-directories of 1Mb or more:
    extdata  101.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/topdownrdata.Rcheck/00check.log'
for details.



Installation output

topdownrdata.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/topdownrdata_1.13.0.tar.gz && rm -rf topdownrdata.buildbin-libdir && mkdir topdownrdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=topdownrdata.buildbin-libdir topdownrdata_1.13.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL topdownrdata_1.13.0.zip && rm topdownrdata_1.13.0.tar.gz topdownrdata_1.13.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 51  100M   51 51.8M    0     0  99.3M      0  0:00:01 --:--:--  0:00:01 99.1M
100  100M  100  100M    0     0   105M      0 --:--:-- --:--:-- --:--:--  105M

install for i386

* installing *source* package 'topdownrdata' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'topdownrdata'
    finding HTML links ... done
    topDownDataPath                         html  
REDIRECT:topic	 topDownDataPath -> topDownDataPath.html [ SUCCESS ]
    topdownrdata-package                    html  
REDIRECT:topic	 topdownrdata -> topdownrdata-package.html [ SUCCESS ]
REDIRECT:topic	 topdownrdata-package -> topdownrdata-package.html [ SUCCESS ]
    finding level-2 HTML links ... done

** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'topdownrdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'topdownrdata' as topdownrdata_1.13.0.zip
* DONE (topdownrdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'topdownrdata' successfully unpacked and MD5 sums checked

Tests output


Example timings

topdownrdata.Rcheck/examples_i386/topdownrdata-Ex.timings

nameusersystemelapsed
topDownDataPath000
topdownrdata-package2.080.062.16

topdownrdata.Rcheck/examples_x64/topdownrdata-Ex.timings

nameusersystemelapsed
topDownDataPath000
topdownrdata-package2.400.162.57