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INSTALL report for spatialLIBD on riesling1

This page was generated on 2021-01-18 15:58:51 -0500 (Mon, 18 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE spatialLIBD PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 341/385HostnameOS / ArchINSTALLBUILDCHECK
spatialLIBD 1.3.1
Leonardo Collado-Torres
Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/spatialLIBD
Branch: master
Last Commit: a14282a
Last Changed Date: 2020-12-17 18:38:41 -0500 (Thu, 17 Dec 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  ERROR 

Summary

Package: spatialLIBD
Version: 1.3.1
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/spatialLIBD_1.3.1.tar.gz && rm -rf spatialLIBD.buildbin-libdir && mkdir spatialLIBD.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spatialLIBD.buildbin-libdir spatialLIBD_1.3.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL spatialLIBD_1.3.1.zip && rm spatialLIBD_1.3.1.tar.gz spatialLIBD_1.3.1.zip
StartedAt: 2021-01-18 10:20:15 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 10:21:35 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 80.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/spatialLIBD_1.3.1.tar.gz && rm -rf spatialLIBD.buildbin-libdir && mkdir spatialLIBD.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spatialLIBD.buildbin-libdir spatialLIBD_1.3.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL spatialLIBD_1.3.1.zip && rm spatialLIBD_1.3.1.tar.gz spatialLIBD_1.3.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 8503k  100 8503k    0     0  58.4M      0 --:--:-- --:--:-- --:--:-- 58.4M

install for i386

* installing *source* package 'spatialLIBD' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'spatialLIBD'
    finding HTML links ... done
    check_image_path                        html  
REDIRECT:topic	 check_image_path -> check_image_path.html [ SUCCESS ]
    finding level-2 HTML links ... done

    check_modeling_results                  html  
REDIRECT:topic	 check_modeling_results -> check_modeling_results.html [ SUCCESS ]
    check_sce                               html  
REDIRECT:topic	 check_sce -> check_sce.html [ SUCCESS ]
    check_sce_layer                         html  
REDIRECT:topic	 check_sce_layer -> check_sce_layer.html [ SUCCESS ]
    enough_ram                              html  
REDIRECT:topic	 enough_ram -> enough_ram.html [ SUCCESS ]
    fetch_data                              html  
REDIRECT:topic	 fetch_data -> fetch_data.html [ SUCCESS ]
    gene_set_enrichment                     html  
REDIRECT:topic	 gene_set_enrichment -> gene_set_enrichment.html [ SUCCESS ]
    gene_set_enrichment_plot                html  
REDIRECT:topic	 gene_set_enrichment_plot -> gene_set_enrichment_plot.html [ SUCCESS ]
    geom_spatial                            html  
REDIRECT:topic	 geom_spatial -> geom_spatial.html [ SUCCESS ]
    get_colors                              html  
REDIRECT:topic	 get_colors -> get_colors.html [ SUCCESS ]
    layer_boxplot                           html  
REDIRECT:topic	 layer_boxplot -> layer_boxplot.html [ SUCCESS ]
    layer_matrix_plot                       html  
REDIRECT:topic	 layer_matrix_plot -> layer_matrix_plot.html [ SUCCESS ]
    layer_stat_cor                          html  
REDIRECT:topic	 layer_stat_cor -> layer_stat_cor.html [ SUCCESS ]
    layer_stat_cor_plot                     html  
REDIRECT:topic	 layer_stat_cor_plot -> layer_stat_cor_plot.html [ SUCCESS ]
    libd_layer_colors                       html  
REDIRECT:topic	 libd_layer_colors -> libd_layer_colors.html [ SUCCESS ]
    read_image                              html  
REDIRECT:topic	 read_image -> read_image.html [ SUCCESS ]
    run_app                                 html  
REDIRECT:topic	 run_app -> run_app.html [ SUCCESS ]
    sce_image_clus                          html  
REDIRECT:topic	 sce_image_clus -> sce_image_clus.html [ SUCCESS ]
    sce_image_clus_p                        html  
REDIRECT:topic	 sce_image_clus_p -> sce_image_clus_p.html [ SUCCESS ]
    sce_image_gene                          html  
REDIRECT:topic	 sce_image_gene -> sce_image_gene.html [ SUCCESS ]
    sce_image_gene_p                        html  
REDIRECT:topic	 sce_image_gene_p -> sce_image_gene_p.html [ SUCCESS ]
    sce_image_grid                          html  
REDIRECT:topic	 sce_image_grid -> sce_image_grid.html [ SUCCESS ]
    sce_image_grid_gene                     html  
REDIRECT:topic	 sce_image_grid_gene -> sce_image_grid_gene.html [ SUCCESS ]
    sce_to_ve                               html  
REDIRECT:topic	 sce_to_ve -> sce_to_ve.html [ SUCCESS ]
    sig_genes_extract                       html  
REDIRECT:topic	 sig_genes_extract -> sig_genes_extract.html [ SUCCESS ]
    sig_genes_extract_all                   html  
REDIRECT:topic	 sig_genes_extract_all -> sig_genes_extract_all.html [ SUCCESS ]
    sort_clusters                           html  
REDIRECT:topic	 sort_clusters -> sort_clusters.html [ SUCCESS ]
    spatialLIBD-package                     html  
REDIRECT:topic	 spatialLIBD -> spatialLIBD-package.html [ SUCCESS ]
REDIRECT:topic	 spatialLIBD-package -> spatialLIBD-package.html [ SUCCESS ]
    tstats_Human_DLPFC_snRNAseq_Nguyen_topLayer
                                            html  
REDIRECT:topic	 tstats_Human_DLPFC_snRNAseq_Nguyen_topLayer -> tstats_Human_DLPFC_snRNAseq_Nguyen_topLayer.html [ SUCCESS ]
    update_scaleFactors                     html  
REDIRECT:topic	 update_scaleFactors -> update_scaleFactors.html [ SUCCESS ]
    ve_image_colData                        html  
REDIRECT:topic	 ve_image_colData -> ve_image_colData.html [ SUCCESS ]
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'spatialLIBD' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'spatialLIBD' as spatialLIBD_1.3.1.zip
* DONE (spatialLIBD)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'spatialLIBD' successfully unpacked and MD5 sums checked