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CHECK report for seventyGeneData on riesling1

This page was generated on 2021-01-11 15:59:33 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE seventyGeneData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 330/385HostnameOS / ArchINSTALLBUILDCHECK
seventyGeneData 1.27.0
Luigi Marchionni
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/seventyGeneData
Branch: master
Last Commit: 02cf375
Last Changed Date: 2020-10-27 10:04:12 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: seventyGeneData
Version: 1.27.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:seventyGeneData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings seventyGeneData_1.27.0.tar.gz
StartedAt: 2021-01-11 11:46:28 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 11:47:14 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 46.2 seconds
RetCode: 0
Status:  OK  
CheckDir: seventyGeneData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:seventyGeneData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings seventyGeneData_1.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/seventyGeneData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'seventyGeneData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'seventyGeneData' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'seventyGeneData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 148.2Mb
  sub-directories of 1Mb or more:
    data     55.5Mb
    extdata  92.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
seventyGeneData 5.36   0.17    5.53
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/seventyGeneData.Rcheck/00check.log'
for details.



Installation output

seventyGeneData.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/seventyGeneData_1.27.0.tar.gz && rm -rf seventyGeneData.buildbin-libdir && mkdir seventyGeneData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seventyGeneData.buildbin-libdir seventyGeneData_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL seventyGeneData_1.27.0.zip && rm seventyGeneData_1.27.0.tar.gz seventyGeneData_1.27.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  144M    0  705k    0     0  2915k      0  0:00:50 --:--:--  0:00:50 2903k
  7  144M    7 11.2M    0     0  9337k      0  0:00:15  0:00:01  0:00:14 9329k
 68  144M   68 99.6M    0     0  44.6M      0  0:00:03  0:00:02  0:00:01 44.6M
100  144M  100  144M    0     0  54.6M      0  0:00:02  0:00:02 --:--:-- 54.6M

install for i386

* installing *source* package 'seventyGeneData' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'seventyGeneData'
    finding HTML links ... done
    seventyGeneData                         html  
REDIRECT:topic	 seventyGeneData-package -> seventyGeneData.html [ SUCCESS ]
REDIRECT:topic	 seventyGeneData -> seventyGeneData.html [ SUCCESS ]
    vanDeVijver                             html  
REDIRECT:topic	 vanDeVijver -> vanDeVijver.html [ SUCCESS ]
    vantVeer                                html  
REDIRECT:topic	 vantVeer -> vantVeer.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'seventyGeneData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seventyGeneData' as seventyGeneData_1.27.0.zip
* DONE (seventyGeneData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'seventyGeneData' successfully unpacked and MD5 sums checked

Tests output


Example timings

seventyGeneData.Rcheck/examples_i386/seventyGeneData-Ex.timings

nameusersystemelapsed
seventyGeneData5.360.175.53
vanDeVijver3.630.093.72
vantVeer1.170.081.25

seventyGeneData.Rcheck/examples_x64/seventyGeneData-Ex.timings

nameusersystemelapsed
seventyGeneData4.060.194.25
vanDeVijver2.640.082.72
vantVeer0.840.090.94