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INSTALL report for scRNAseq on riesling1

This page was generated on 2021-01-14 15:59:11 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE scRNAseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 323/385HostnameOS / ArchINSTALLBUILDCHECK
scRNAseq 2.5.1
Aaron Lun
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/scRNAseq
Branch: master
Last Commit: f6c502b
Last Changed Date: 2021-01-14 00:05:28 -0500 (Thu, 14 Jan 2021)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  ERROR 

Summary

Package: scRNAseq
Version: 2.5.1
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/scRNAseq_2.5.1.tar.gz && rm -rf scRNAseq.buildbin-libdir && mkdir scRNAseq.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scRNAseq.buildbin-libdir scRNAseq_2.5.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL scRNAseq_2.5.1.zip && rm scRNAseq_2.5.1.tar.gz scRNAseq_2.5.1.zip
StartedAt: 2021-01-14 10:09:44 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 10:10:35 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 50.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/scRNAseq_2.5.1.tar.gz && rm -rf scRNAseq.buildbin-libdir && mkdir scRNAseq.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scRNAseq.buildbin-libdir scRNAseq_2.5.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL scRNAseq_2.5.1.zip && rm scRNAseq_2.5.1.tar.gz scRNAseq_2.5.1.zip
###
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100 91984  100 91984    0     0   590k      0 --:--:-- --:--:-- --:--:--  590k

install for i386

* installing *source* package 'scRNAseq' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scRNAseq'
    finding HTML links ... done
    AztekinTailData                         html  
REDIRECT:topic	 AztekinTailData -> AztekinTailData.html [ SUCCESS ]
    finding level-2 HTML links ... done

    BachMammaryData                         html  
REDIRECT:topic	 BachMammaryData -> BachMammaryData.html [ SUCCESS ]
    BacherTCellData                         html  
REDIRECT:topic	 BacherTCellData -> BacherTCellData.html [ SUCCESS ]
    BaronPancreasData                       html  
REDIRECT:topic	 BaronPancreasData -> BaronPancreasData.html [ SUCCESS ]
    BuettnerESCData                         html  
REDIRECT:topic	 BuettnerESCData -> BuettnerESCData.html [ SUCCESS ]
    CampbellBrainData                       html  
REDIRECT:topic	 CampbellBrainData -> CampbellBrainData.html [ SUCCESS ]
    ChenBrainData                           html  
REDIRECT:topic	 ChenBrainData -> ChenBrainData.html [ SUCCESS ]
    DarmanisBrainData                       html  
REDIRECT:topic	 DarmanisBrainData -> DarmanisBrainData.html [ SUCCESS ]
    ERCCSpikeInConcentrations               html  
REDIRECT:topic	 ERCCSpikeInConcentrations -> ERCCSpikeInConcentrations.html [ SUCCESS ]
    GiladiHSCData                           html  
REDIRECT:topic	 GiladiHSCData -> GiladiHSCData.html [ SUCCESS ]
    GrunHSCData                             html  
REDIRECT:topic	 GrunHSCData -> GrunHSCData.html [ SUCCESS ]
    GrunPancreasData                        html  
REDIRECT:topic	 GrunPancreasData -> GrunPancreasData.html [ SUCCESS ]
    HermannSpermatogenesisData              html  
REDIRECT:topic	 HermannSpermatogenesisData -> HermannSpermatogenesisData.html [ SUCCESS ]
    HuCortexData                            html  
REDIRECT:topic	 HuCortexData -> HuCortexData.html [ SUCCESS ]
    KolodziejczykESCData                    html  
REDIRECT:topic	 KolodziejczykESCData -> KolodziejczykESCData.html [ SUCCESS ]
    KotliarovPBMCData                       html  
REDIRECT:topic	 KotliarovPBMCData -> KotliarovPBMCData.html [ SUCCESS ]
    LaMannoBrainData                        html  
REDIRECT:topic	 LaMannoBrainData -> LaMannoBrainData.html [ SUCCESS ]
    LawlorPancreasData                      html  
REDIRECT:topic	 LawlorPancreasData -> LawlorPancreasData.html [ SUCCESS ]
    LengESCData                             html  
REDIRECT:topic	 LengESCData -> LengESCData.html [ SUCCESS ]
    LunSpikeInData                          html  
REDIRECT:topic	 LunSpikeInData -> LunSpikeInData.html [ SUCCESS ]
    MacoskoRetinaData                       html  
REDIRECT:topic	 MacoskoRetinaData -> MacoskoRetinaData.html [ SUCCESS ]
    MairPBMCData                            html  
REDIRECT:topic	 MairPBMCData -> MairPBMCData.html [ SUCCESS ]
    MarquesBrainData                        html  
REDIRECT:topic	 MarquesBrainData -> MarquesBrainData.html [ SUCCESS ]
    MessmerESCData                          html  
REDIRECT:topic	 MessmerESCData -> MessmerESCData.html [ SUCCESS ]
    MuraroPancreasData                      html  
REDIRECT:topic	 MuraroPancreasData -> MuraroPancreasData.html [ SUCCESS ]
    NestorowaHSCData                        html  
REDIRECT:topic	 NestorowaHSCData -> NestorowaHSCData.html [ SUCCESS ]
    PaulHSCData                             html  
REDIRECT:topic	 PaulHSCData -> PaulHSCData.html [ SUCCESS ]
    ReprocessedData                         html  
REDIRECT:topic	 ReprocessedAllenData -> ReprocessedData.html [ SUCCESS ]
REDIRECT:topic	 ReprocessedTh2Data -> ReprocessedData.html [ SUCCESS ]
REDIRECT:topic	 ReprocessedFluidigmData -> ReprocessedData.html [ SUCCESS ]
REDIRECT:file	 ReprocessedData.html -> ReprocessedData.html [ SUCCESS ]
    RichardTCellData                        html  
REDIRECT:topic	 RichardTCellData -> RichardTCellData.html [ SUCCESS ]
    RomanovBrainData                        html  
REDIRECT:topic	 RomanovBrainData -> RomanovBrainData.html [ SUCCESS ]
    SegerstolpePancreasData                 html  
REDIRECT:topic	 SegerstolpePancreasData -> SegerstolpePancreasData.html [ SUCCESS ]
    ShekharRetinaData                       html  
REDIRECT:topic	 ShekharRetinaData -> ShekharRetinaData.html [ SUCCESS ]
    StoeckiusHashingData                    html  
REDIRECT:topic	 StoeckiusHashingData -> StoeckiusHashingData.html [ SUCCESS ]
    TasicBrainData                          html  
REDIRECT:topic	 TasicBrainData -> TasicBrainData.html [ SUCCESS ]
    UsoskinBrainData                        html  
REDIRECT:topic	 UsoskinBrainData -> UsoskinBrainData.html [ SUCCESS ]
    WuKidneyData                            html  
REDIRECT:topic	 WuKidneyData -> WuKidneyData.html [ SUCCESS ]
    XinPancreasData                         html  
REDIRECT:topic	 XinPancreasData -> XinPancreasData.html [ SUCCESS ]
    ZeiselBrainData                         html  
REDIRECT:topic	 ZeiselBrainData -> ZeiselBrainData.html [ SUCCESS ]
    ZhongPrefrontalData                     html  
REDIRECT:topic	 ZhongPrefrontalData -> ZhongPrefrontalData.html [ SUCCESS ]
    ZilionisLungData                        html  
REDIRECT:topic	 ZilionisLungData -> ZilionisLungData.html [ SUCCESS ]
    listDatasets                            html  
REDIRECT:topic	 listDatasets -> listDatasets.html [ SUCCESS ]
    scRNAseq-package                        html  
REDIRECT:topic	 scRNAseq-package -> scRNAseq-package.html [ SUCCESS ]
REDIRECT:topic	 scRNAseq -> scRNAseq-package.html [ SUCCESS ]
REDIRECT:topic	 fluidigm -> scRNAseq-package.html [ SUCCESS ]
REDIRECT:topic	 th2 -> scRNAseq-package.html [ SUCCESS ]
REDIRECT:topic	 allen -> scRNAseq-package.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scRNAseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scRNAseq' as scRNAseq_2.5.1.zip
* DONE (scRNAseq)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'scRNAseq' successfully unpacked and MD5 sums checked