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CHECK report for qPLEXdata on riesling1

This page was generated on 2020-12-28 15:59:20 -0500 (Mon, 28 Dec 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE qPLEXdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 286/385HostnameOS / ArchINSTALLBUILDCHECK
qPLEXdata 1.9.0
Kamal Kishore Developer
Snapshot Date: 2020-12-28 09:00:08 -0500 (Mon, 28 Dec 2020)
URL: https://git.bioconductor.org/packages/qPLEXdata
Branch: master
Last Commit: ffaf3d3
Last Changed Date: 2020-10-27 10:27:05 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: qPLEXdata
Version: 1.9.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:qPLEXdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings qPLEXdata_1.9.0.tar.gz
StartedAt: 2020-12-28 11:37:50 -0500 (Mon, 28 Dec 2020)
EndedAt: 2020-12-28 11:39:43 -0500 (Mon, 28 Dec 2020)
EllapsedTime: 112.3 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: qPLEXdata.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:qPLEXdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings qPLEXdata_1.9.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/qPLEXdata.Rcheck'
* using R Under development (unstable) (2020-11-06 r79405)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'qPLEXdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'qPLEXdata' version '1.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'qPLEXdata' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'dplyr::combine' by 'MSnbase::combine' when loading 'qPLEXdata'
See 'D:/biocbuild/bbs-3.13-data-experiment/meat/qPLEXdata.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is 11.8Mb
  sub-directories of 1Mb or more:
    data  11.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/qPLEXdata.Rcheck/00check.log'
for details.



Installation output

qPLEXdata.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/qPLEXdata_1.9.0.tar.gz && rm -rf qPLEXdata.buildbin-libdir && mkdir qPLEXdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qPLEXdata.buildbin-libdir qPLEXdata_1.9.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL qPLEXdata_1.9.0.zip && rm qPLEXdata_1.9.0.tar.gz qPLEXdata_1.9.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 11.5M  100 11.5M    0     0  39.0M      0 --:--:-- --:--:-- --:--:-- 39.0M

install for i386

* installing *source* package 'qPLEXdata' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'dplyr::combine' by 'MSnbase::combine' when loading 'qPLEXdata'
** help
*** installing help indices
  converting help for package 'qPLEXdata'
    finding HTML links ... done
    exp1_specificity                        html  
REDIRECT:topic	 exp1_specificity -> exp1_specificity.html [ SUCCESS ]
    exp2_Xlink                              html  
REDIRECT:topic	 exp2_Xlink -> exp2_Xlink.html [ SUCCESS ]
    exp3_OHT_ESR1                           html  
REDIRECT:topic	 exp3_OHT_ESR1 -> exp3_OHT_ESR1.html [ SUCCESS ]
    exp4_OHT_FP                             html  
REDIRECT:topic	 exp4_OHT_FP -> exp4_OHT_FP.html [ SUCCESS ]
    exp5_PDX                                html  
REDIRECT:topic	 exp5_PDX -> exp5_PDX.html [ SUCCESS ]
    exp6_ER                                 html  
REDIRECT:topic	 exp6_ER -> exp6_ER.html [ SUCCESS ]
    exp7_NCOA3                              html  
REDIRECT:topic	 exp7_NCOA3 -> exp7_NCOA3.html [ SUCCESS ]
    exp8_CBP                                html  
REDIRECT:topic	 exp8_CBP -> exp8_CBP.html [ SUCCESS ]
    exp9_PolII                              html  
REDIRECT:topic	 exp9_PolII -> exp9_PolII.html [ SUCCESS ]
    qPLEXdata                               html  
REDIRECT:topic	 qPLEXdata -> qPLEXdata.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'dplyr::combine' by 'MSnbase::combine' when loading 'qPLEXdata'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'dplyr::combine' by 'MSnbase::combine' when loading 'qPLEXdata'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'qPLEXdata' ...
** testing if installed package can be loaded
Warning: replacing previous import 'dplyr::combine' by 'MSnbase::combine' when loading 'qPLEXdata'
* MD5 sums
packaged installation of 'qPLEXdata' as qPLEXdata_1.9.0.zip
* DONE (qPLEXdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'qPLEXdata' successfully unpacked and MD5 sums checked

Tests output


Example timings

qPLEXdata.Rcheck/examples_i386/qPLEXdata-Ex.timings

nameusersystemelapsed
qPLEXdata0.000.000.01

qPLEXdata.Rcheck/examples_x64/qPLEXdata-Ex.timings

nameusersystemelapsed
qPLEXdata000