Xuejun liu
| Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021) |
| URL: https://git.bioconductor.org/packages/pumadata |
| Branch: master |
| Last Commit: b7849ba |
| Last Changed Date: 2020-10-27 09:47:30 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-18 15:58:50 -0500 (Mon, 18 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE pumadata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 279/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| pumadata 2.27.0 Xuejun liu
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] |
| Package: pumadata |
| Version: 2.27.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pumadata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings pumadata_2.27.0.tar.gz |
| StartedAt: 2021-01-18 11:39:21 -0500 (Mon, 18 Jan 2021) |
| EndedAt: 2021-01-18 11:42:03 -0500 (Mon, 18 Jan 2021) |
| EllapsedTime: 162.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: pumadata.Rcheck |
| Warnings: 0 |
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### Running command:
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### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pumadata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings pumadata_2.27.0.tar.gz
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/pumadata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pumadata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pumadata' version '2.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pumadata' can be installed ... OK
* checking installed package size ... NOTE
installed size is 105.1Mb
sub-directories of 1Mb or more:
data 104.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/pumadata.Rcheck/00check.log'
for details.
pumadata.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/pumadata_2.27.0.tar.gz && rm -rf pumadata.buildbin-libdir && mkdir pumadata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pumadata.buildbin-libdir pumadata_2.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL pumadata_2.27.0.zip && rm pumadata_2.27.0.tar.gz pumadata_2.27.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
21 101M 21 22.2M 0 0 26.0M 0 0:00:03 --:--:-- 0:00:03 25.9M
100 101M 100 101M 0 0 62.4M 0 0:00:01 0:00:01 --:--:-- 62.4M
install for i386
* installing *source* package 'pumadata' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'pumadata'
finding HTML links ... done
HTA_Location html
REDIRECT:topic HTA_Location -> HTA_Location.html [ SUCCESS ]
HTA_probes_transcripts html
REDIRECT:topic HTA_probes_transcripts -> HTA_probes_transcripts.html [ SUCCESS ]
HTA_transcript_NO html
REDIRECT:topic HTA_transcript_NO -> HTA_transcript_NO.html [ SUCCESS ]
HTA_transcript_name html
REDIRECT:topic HTA_transcript_name -> HTA_transcript_name.html [ SUCCESS ]
Human_Location html
REDIRECT:topic Human_Location -> Human_Location.html [ SUCCESS ]
Human_probes_transcripts html
REDIRECT:topic Human_probes_transcripts -> Human_probes_transcripts.html [ SUCCESS ]
Human_transcript_NO html
REDIRECT:topic Human_transcript_NO -> Human_transcript_NO.html [ SUCCESS ]
Human_transcript_name html
REDIRECT:topic Human_transcript_name -> Human_transcript_name.html [ SUCCESS ]
Mouse_Location html
REDIRECT:topic Mouse_Location -> Mouse_Location.html [ SUCCESS ]
Mouse_probes_alpha html
REDIRECT:topic Mouse_probes_transcripts -> Mouse_probes_alpha.html [ SUCCESS ]
REDIRECT:file Mouse_probes_alpha.html -> Mouse_probes_alpha.html [ SUCCESS ]
Mouse_transcript_NO html
REDIRECT:topic Mouse_transcript_NO -> Mouse_transcript_NO.html [ SUCCESS ]
Mouse_transcript_name html
REDIRECT:topic Mouse_transcript_name -> Mouse_transcript_name.html [ SUCCESS ]
Rat_Location html
REDIRECT:topic Rat_Location -> Rat_Location.html [ SUCCESS ]
Rat_probes_alpha html
REDIRECT:topic Rat_probes_transcripts -> Rat_probes_alpha.html [ SUCCESS ]
REDIRECT:file Rat_probes_alpha.html -> Rat_probes_alpha.html [ SUCCESS ]
Rat_transcript_NO html
REDIRECT:topic Rat_transcript_NO -> Rat_transcript_NO.html [ SUCCESS ]
Rat_transcript_name html
REDIRECT:topic Rat_transcript_name -> Rat_transcript_name.html [ SUCCESS ]
affybatch.estrogen html
REDIRECT:topic affybatch.estrogen -> affybatch.estrogen.html [ SUCCESS ]
eset_estrogen_comb html
REDIRECT:topic eset_estrogen_comb -> eset_estrogen_comb.html [ SUCCESS ]
eset_estrogen_mmgmos html
REDIRECT:topic eset_estrogen_mmgmos -> eset_estrogen_mmgmos.html [ SUCCESS ]
eset_estrogen_pmmmgmos html
REDIRECT:topic eset_estrogen_pmmmgmos -> eset_estrogen_pmmmgmos.html [ SUCCESS ]
eset_estrogen_rma html
REDIRECT:topic eset_estrogen_rma -> eset_estrogen_rma.html [ SUCCESS ]
oligo.estrogen html
REDIRECT:topic oligo.estrogen -> oligo.estrogen.html [ SUCCESS ]
pumapca_estrogen html
REDIRECT:topic pumapca_estrogen -> pumapca_estrogen.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pumadata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pumadata' as pumadata_2.27.0.zip
* DONE (pumadata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'pumadata' successfully unpacked and MD5 sums checked
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pumadata.Rcheck/examples_i386/pumadata-Ex.timings
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pumadata.Rcheck/examples_x64/pumadata-Ex.timings
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