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CHECK report for prebsdata on riesling1

This page was generated on 2021-01-14 15:59:10 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE prebsdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 268/385HostnameOS / ArchINSTALLBUILDCHECK
prebsdata 1.27.0
Karolis Uziela
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/prebsdata
Branch: master
Last Commit: 24e7136
Last Changed Date: 2020-10-27 10:02:06 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: prebsdata
Version: 1.27.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:prebsdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings prebsdata_1.27.0.tar.gz
StartedAt: 2021-01-14 11:33:53 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:34:10 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 17.0 seconds
RetCode: 0
Status:  OK  
CheckDir: prebsdata.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:prebsdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings prebsdata_1.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/prebsdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'prebsdata/DESCRIPTION' ... OK
* this is package 'prebsdata' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'prebsdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 97.5Mb
  sub-directories of 1Mb or more:
    custom-cdf        29.0Mb
    manufacturer-cdf  67.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/prebsdata.Rcheck/00check.log'
for details.



Installation output

prebsdata.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/prebsdata_1.27.0.tar.gz && rm -rf prebsdata.buildbin-libdir && mkdir prebsdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=prebsdata.buildbin-libdir prebsdata_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL prebsdata_1.27.0.zip && rm prebsdata_1.27.0.tar.gz prebsdata_1.27.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 23.9M    0  160k    0     0   383k      0  0:01:04 --:--:--  0:01:04  382k
  8 23.9M    8 2208k    0     0  1533k      0  0:00:16  0:00:01  0:00:15 1533k
 18 23.9M   18 4443k    0     0  1761k      0  0:00:13  0:00:02  0:00:11 1761k
 37 23.9M   37 9297k    0     0  2664k      0  0:00:09  0:00:03  0:00:06 2663k
100 23.9M  100 23.9M    0     0  6421k      0  0:00:03  0:00:03 --:--:-- 6419k

install for i386

* installing *source* package 'prebsdata' ...
** using staged installation
** inst
** help
No man pages found in package  'prebsdata' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'prebsdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'prebsdata' as prebsdata_1.27.0.zip
* DONE (prebsdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'prebsdata' successfully unpacked and MD5 sums checked

Tests output


Example timings