Bioconductor Package Maintainer
| Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021) |
| URL: https://git.bioconductor.org/packages/ppiData |
| Branch: master |
| Last Commit: b2d6691 |
| Last Changed Date: 2020-10-27 09:46:51 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-14 15:59:10 -0500 (Thu, 14 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE ppiData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 267/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| ppiData 0.29.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ WARNINGS ] |
| Package: ppiData |
| Version: 0.29.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ppiData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ppiData_0.29.0.tar.gz |
| StartedAt: 2021-01-14 11:33:50 -0500 (Thu, 14 Jan 2021) |
| EndedAt: 2021-01-14 11:35:17 -0500 (Thu, 14 Jan 2021) |
| EllapsedTime: 86.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ppiData.Rcheck |
| Warnings: 1 |
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### Running command:
###
### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ppiData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ppiData_0.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/ppiData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'graph'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
collectIntactPPIData: no visible binding for global variable 'recover'
collectIntactPPIData: no visible global function definition for 'data'
collectIntactPPIData: no visible binding for global variable
'tableList'
collectIntactPPIData: no visible binding for global variable 'sWAC2Sys'
collectIntactPPIData : <anonymous>: no visible binding for global
variable 'tableList'
collectIntactPPIData : <anonymous> : <anonymous>: no visible binding
for global variable 'tableList'
intAct2Sys: no visible binding for global variable 'recover'
map2Systematic: no visible binding for global variable
'org.Sc.sgdCOMMON2ORF'
map2Systematic: no visible binding for global variable
'org.Sc.sgdALIAS'
map2Systematic: no visible binding for global variable
'org.Sc.sgdREJECTORF'
Undefined global functions or variables:
data org.Sc.sgdALIAS org.Sc.sgdCOMMON2ORF org.Sc.sgdREJECTORF recover
sWAC2Sys tableList
Consider adding
importFrom("utils", "data", "recover")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Warning: large data file saved inefficiently:
size ASCII compress
ppipred.rda 896Kb FALSE none
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
Gavin2002BPGraph.rda 17Kb 10Kb xz
Gavin2006BPGraph.rda 50Kb 27Kb bzip2
Hazbun2003BPGraph.rda 20Kb 8Kb xz
Ho2002BPGraph.rda 19Kb 9Kb xz
Ito2001BPGraph.rda 33Kb 15Kb xz
ItoFull2001BPGraph.rda 33Kb 15Kb xz
Krogan2006BPGraph.rda 151Kb 84Kb bzip2
intActPPIData.rda 114Kb 63Kb xz
ppipred.rda 896Kb 85Kb xz
sWAC2Sys.rda 35Kb 18Kb xz
stochasticBaits.rda 31Kb 20Kb bzip2
tableList.rda 2.0Mb 783Kb xz
twTableAPMS.rda 24Kb 15Kb bzip2
viableBaits.rda 22Kb 14Kb xz
viablePrey.rda 47Kb 30Kb bzip2
y2h.rda 76Kb 47Kb bzip2
y2hSysGW.rda 71Kb 44Kb bzip2
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/ppiData.Rcheck/00check.log'
for details.
ppiData.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/ppiData_0.29.0.tar.gz && rm -rf ppiData.buildbin-libdir && mkdir ppiData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ppiData.buildbin-libdir ppiData_0.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ppiData_0.29.0.zip && rm ppiData_0.29.0.tar.gz ppiData_0.29.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2868k 100 2868k 0 0 28.2M 0 --:--:-- --:--:-- --:--:-- 28.2M
install for i386
* installing *source* package 'ppiData' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ppiData'
finding HTML links ... done
Cagney2001BPGraph html
REDIRECT:topic Cagney2001BPGraph -> Cagney2001BPGraph.html [ SUCCESS ]
Gavin2002BPGraph html
REDIRECT:topic Gavin2002BPGraph -> Gavin2002BPGraph.html [ SUCCESS ]
Gavin2006bPGraph html
REDIRECT:topic Gavin2006BPGraph -> Gavin2006bPGraph.html [ SUCCESS ]
Hazbun2003BPGraph html
REDIRECT:topic Hazbun2003BPGraph -> Hazbun2003BPGraph.html [ SUCCESS ]
Ho2002BPGraph html
REDIRECT:topic Ho2002BPGraph -> Ho2002BPGraph.html [ SUCCESS ]
Ito2001BPGraph html
REDIRECT:topic Ito2001BPGraph -> Ito2001BPGraph.html [ SUCCESS ]
ItoCore2001BPGraph html
REDIRECT:topic ItoCore2001BPGraph -> ItoCore2001BPGraph.html [ SUCCESS ]
ItoFull2001BPGraph html
REDIRECT:topic ItoFull2001BPGraph -> ItoFull2001BPGraph.html [ SUCCESS ]
Krogan2004BPGraph html
REDIRECT:topic Krogan2004BPGraph -> Krogan2004BPGraph.html [ SUCCESS ]
Krogan2006BPGraph html
REDIRECT:topic Krogan2006BPGraph -> Krogan2006BPGraph.html [ SUCCESS ]
Tong2002BPGraph html
REDIRECT:topic Tong2002BPGraph -> Tong2002BPGraph.html [ SUCCESS ]
Uetz2000BPGraph1 html
REDIRECT:topic Uetz2000BPGraph1 -> Uetz2000BPGraph1.html [ SUCCESS ]
Uetz2000BPGraph2 html
REDIRECT:topic Uetz2000BPGraph2 -> Uetz2000BPGraph2.html [ SUCCESS ]
Zhao2005BPGraph html
REDIRECT:topic Zhao2005BPGraph -> Zhao2005BPGraph.html [ SUCCESS ]
bpExperimentNames html
REDIRECT:topic bpExperimentNames -> bpExperimentNames.html [ SUCCESS ]
collectIntactPPIData html
REDIRECT:topic collectIntactPPIData -> collectIntactPPIData.html [ SUCCESS ]
createBPList html
REDIRECT:topic createBPList -> createBPList.html [ SUCCESS ]
intAct2Sys html
REDIRECT:topic intAct2Sys -> intAct2Sys.html [ SUCCESS ]
intActPPIData html
REDIRECT:topic intActPPIData -> intActPPIData.html [ SUCCESS ]
map2Systematic html
REDIRECT:topic map2Systematic -> map2Systematic.html [ SUCCESS ]
map2Systematic2 html
REDIRECT:topic map2Systematic2 -> map2Systematic2.html [ SUCCESS ]
ppipred html
REDIRECT:topic ppipred -> ppipred.html [ SUCCESS ]
sWAC2Sys html
REDIRECT:topic sWAC2Sys -> sWAC2Sys.html [ SUCCESS ]
stochasticBaits html
REDIRECT:topic stochasticBaits -> stochasticBaits.html [ SUCCESS ]
tableList html
REDIRECT:topic tableList -> tableList.html [ SUCCESS ]
twTableAPMS html
REDIRECT:topic twTableAPMS -> twTableAPMS.html [ SUCCESS ]
twTableY2H html
REDIRECT:topic twTableY2H -> twTableY2H.html [ SUCCESS ]
viableProteins html
REDIRECT:topic viablePrey -> viableProteins.html [ SUCCESS ]
REDIRECT:topic viableBaits -> viableProteins.html [ SUCCESS ]
REDIRECT:file viableProteins.html -> viableProteins.html [ SUCCESS ]
y2h html
REDIRECT:topic y2h -> y2h.html [ SUCCESS ]
y2hSysGW html
REDIRECT:topic y2hSysGW -> y2hSysGW.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ppiData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ppiData' as ppiData_0.29.0.zip
* DONE (ppiData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'ppiData' successfully unpacked and MD5 sums checked
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ppiData.Rcheck/examples_i386/ppiData-Ex.timings
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ppiData.Rcheck/examples_x64/ppiData-Ex.timings
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