Alexis Delabriere
| Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021) |
| URL: https://git.bioconductor.org/packages/plasFIA |
| Branch: master |
| Last Commit: eab8deb |
| Last Changed Date: 2020-12-07 08:50:10 -0500 (Mon, 07 Dec 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-11 15:59:32 -0500 (Mon, 11 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE plasFIA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 266/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
Alexis Delabriere
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ WARNINGS ] |
| Package: plasFIA |
| Version: 1.19.1 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:plasFIA.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings plasFIA_1.19.1.tar.gz |
| StartedAt: 2021-01-11 11:39:25 -0500 (Mon, 11 Jan 2021) |
| EndedAt: 2021-01-11 11:42:28 -0500 (Mon, 11 Jan 2021) |
| EllapsedTime: 182.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: plasFIA.Rcheck |
| Warnings: 1 |
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### Running command:
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### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:plasFIA.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings plasFIA_1.19.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/plasFIA.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plasFIA/DESCRIPTION' ... OK
* this is package 'plasFIA' version '1.19.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'plasFIA' can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'proFIA' is deprecated and will be removed from Bioconductor
Warning: Package 'plasFIA' is deprecated and will be removed from Bioconductor
See 'D:/biocbuild/bbs-3.13-data-experiment/meat/plasFIA.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 16.9Mb
sub-directories of 1Mb or more:
mzML 16.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'proFIA'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/plasFIA.Rcheck/00check.log'
for details.
plasFIA.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/plasFIA_1.19.1.tar.gz && rm -rf plasFIA.buildbin-libdir && mkdir plasFIA.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plasFIA.buildbin-libdir plasFIA_1.19.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL plasFIA_1.19.1.zip && rm plasFIA_1.19.1.tar.gz plasFIA_1.19.1.zip
###
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install for i386
* installing *source* package 'plasFIA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'proFIA' is deprecated and will be removed from Bioconductor
version 3.14
** help
*** installing help indices
converting help for package 'plasFIA'
finding HTML links ... done
plasFIA-package html
REDIRECT:topic plasFIA-package -> plasFIA-package.html [ SUCCESS ]
REDIRECT:topic plasFIA -> plasFIA-package.html [ SUCCESS ]
plasMols html
REDIRECT:topic plasMols -> plasMols.html [ SUCCESS ]
plasSamples html
REDIRECT:topic plasSamples -> plasSamples.html [ SUCCESS ]
plasSet html
REDIRECT:topic plasSet -> plasSet.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
Warning: Package 'proFIA' is deprecated and will be removed from Bioconductor
version 3.14
Warning: Package 'plasFIA' is deprecated and will be removed from Bioconductor
version 3.14
** testing if installed package can be loaded from final location
Warning: Package 'proFIA' is deprecated and will be removed from Bioconductor
version 3.14
Warning: Package 'plasFIA' is deprecated and will be removed from Bioconductor
version 3.14
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'plasFIA' ...
** testing if installed package can be loaded
Warning: Package 'proFIA' is deprecated and will be removed from Bioconductor
version 3.14
Warning: Package 'plasFIA' is deprecated and will be removed from Bioconductor
version 3.14
* MD5 sums
packaged installation of 'plasFIA' as plasFIA_1.19.1.zip
* DONE (plasFIA)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'plasFIA' successfully unpacked and MD5 sums checked