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CHECK report for pasilla on riesling1

This page was generated on 2021-01-11 15:59:32 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE pasilla PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 256/385HostnameOS / ArchINSTALLBUILDCHECK
pasilla 1.19.1
Alejandro Reyes
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/pasilla
Branch: master
Last Commit: d3b4885
Last Changed Date: 2020-12-23 13:08:31 -0500 (Wed, 23 Dec 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: pasilla
Version: 1.19.1
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pasilla.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings pasilla_1.19.1.tar.gz
StartedAt: 2021-01-11 11:38:23 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 11:38:52 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 29.1 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: pasilla.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pasilla.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings pasilla_1.19.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/pasilla.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pasilla/DESCRIPTION' ... OK
* this is package 'pasilla' version '1.19.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pasilla' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 22.6Mb
  sub-directories of 1Mb or more:
    extdata  22.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  'dxd'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/pasilla.Rcheck/00check.log'
for details.



Installation output

pasilla.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/pasilla_1.19.1.tar.gz && rm -rf pasilla.buildbin-libdir && mkdir pasilla.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pasilla.buildbin-libdir pasilla_1.19.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL pasilla_1.19.1.zip && rm pasilla_1.19.1.tar.gz pasilla_1.19.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 41 3139k   41 1302k    0     0  1149k      0  0:00:02  0:00:01  0:00:01 1149k
100 3139k  100 3139k    0     0  1940k      0  0:00:01  0:00:01 --:--:-- 1939k

install for i386

* installing *source* package 'pasilla' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'pasilla'
    finding HTML links ... done
    pasillaExons                            html  
REDIRECT:topic	 pasillaDEXSeqDataSet -> pasillaExons.html [ SUCCESS ]
REDIRECT:file	 pasillaExons.html -> pasillaExons.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pasilla' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pasilla' as pasilla_1.19.1.zip
* DONE (pasilla)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'pasilla' successfully unpacked and MD5 sums checked

Tests output


Example timings