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CHECK report for optimalFlowData on riesling1

This page was generated on 2021-01-14 15:59:10 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE optimalFlowData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 254/385HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.3.0
Hristo Inouzhe
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/optimalFlowData
Branch: master
Last Commit: 69d9138
Last Changed Date: 2020-10-27 10:31:47 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: optimalFlowData
Version: 1.3.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:optimalFlowData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings optimalFlowData_1.3.0.tar.gz
StartedAt: 2021-01-14 11:32:43 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:33:39 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 56.2 seconds
RetCode: 0
Status:  OK  
CheckDir: optimalFlowData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:optimalFlowData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings optimalFlowData_1.3.0.tar.gz
###
##############################################################################
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/optimalFlowData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'optimalFlowData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'optimalFlowData' version '1.3.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'optimalFlowData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.2Mb
  sub-directories of 1Mb or more:
    data  100.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/optimalFlowData.Rcheck/00check.log'
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/optimalFlowData_1.3.0.tar.gz && rm -rf optimalFlowData.buildbin-libdir && mkdir optimalFlowData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=optimalFlowData.buildbin-libdir optimalFlowData_1.3.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL optimalFlowData_1.3.0.zip && rm optimalFlowData_1.3.0.tar.gz optimalFlowData_1.3.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 60 75.3M   60 45.3M    0     0  72.5M      0  0:00:01 --:--:--  0:00:01 72.4M
100 75.3M  100 75.3M    0     0  70.2M      0  0:00:01  0:00:01 --:--:-- 70.2M

install for i386

* installing *source* package 'optimalFlowData' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'optimalFlowData'
    finding HTML links ... done
    Cytometry1                              html  
REDIRECT:topic	 Cytometry1 -> Cytometry1.html [ SUCCESS ]
    Cytometry10                             html  
REDIRECT:topic	 Cytometry10 -> Cytometry10.html [ SUCCESS ]
    Cytometry11                             html  
REDIRECT:topic	 Cytometry11 -> Cytometry11.html [ SUCCESS ]
    Cytometry12                             html  
REDIRECT:topic	 Cytometry12 -> Cytometry12.html [ SUCCESS ]
    Cytometry13                             html  
REDIRECT:topic	 Cytometry13 -> Cytometry13.html [ SUCCESS ]
    Cytometry14                             html  
REDIRECT:topic	 Cytometry14 -> Cytometry14.html [ SUCCESS ]
    Cytometry15                             html  
REDIRECT:topic	 Cytometry15 -> Cytometry15.html [ SUCCESS ]
    Cytometry16                             html  
REDIRECT:topic	 Cytometry16 -> Cytometry16.html [ SUCCESS ]
    Cytometry17                             html  
REDIRECT:topic	 Cytometry17 -> Cytometry17.html [ SUCCESS ]
    Cytometry18                             html  
REDIRECT:topic	 Cytometry18 -> Cytometry18.html [ SUCCESS ]
    Cytometry19                             html  
REDIRECT:topic	 Cytometry19 -> Cytometry19.html [ SUCCESS ]
    Cytometry2                              html  
REDIRECT:topic	 Cytometry2 -> Cytometry2.html [ SUCCESS ]
    Cytometry20                             html  
REDIRECT:topic	 Cytometry20 -> Cytometry20.html [ SUCCESS ]
    Cytometry21                             html  
REDIRECT:topic	 Cytometry21 -> Cytometry21.html [ SUCCESS ]
    Cytometry22                             html  
REDIRECT:topic	 Cytometry22 -> Cytometry22.html [ SUCCESS ]
    Cytometry23                             html  
REDIRECT:topic	 Cytometry23 -> Cytometry23.html [ SUCCESS ]
    Cytometry24                             html  
REDIRECT:topic	 Cytometry24 -> Cytometry24.html [ SUCCESS ]
    Cytometry25                             html  
REDIRECT:topic	 Cytometry25 -> Cytometry25.html [ SUCCESS ]
    Cytometry26                             html  
REDIRECT:topic	 Cytometry26 -> Cytometry26.html [ SUCCESS ]
    Cytometry27                             html  
REDIRECT:topic	 Cytometry27 -> Cytometry27.html [ SUCCESS ]
    Cytometry28                             html  
REDIRECT:topic	 Cytometry28 -> Cytometry28.html [ SUCCESS ]
    Cytometry29                             html  
REDIRECT:topic	 Cytometry29 -> Cytometry29.html [ SUCCESS ]
    Cytometry3                              html  
REDIRECT:topic	 Cytometry3 -> Cytometry3.html [ SUCCESS ]
    Cytometry30                             html  
REDIRECT:topic	 Cytometry30 -> Cytometry30.html [ SUCCESS ]
    Cytometry31                             html  
REDIRECT:topic	 Cytometry31 -> Cytometry31.html [ SUCCESS ]
    Cytometry32                             html  
REDIRECT:topic	 Cytometry32 -> Cytometry32.html [ SUCCESS ]
    Cytometry33                             html  
REDIRECT:topic	 Cytometry33 -> Cytometry33.html [ SUCCESS ]
    Cytometry34                             html  
REDIRECT:topic	 Cytometry34 -> Cytometry34.html [ SUCCESS ]
    Cytometry35                             html  
REDIRECT:topic	 Cytometry35 -> Cytometry35.html [ SUCCESS ]
    Cytometry36                             html  
REDIRECT:topic	 Cytometry36 -> Cytometry36.html [ SUCCESS ]
    Cytometry37                             html  
REDIRECT:topic	 Cytometry37 -> Cytometry37.html [ SUCCESS ]
    Cytometry38                             html  
REDIRECT:topic	 Cytometry38 -> Cytometry38.html [ SUCCESS ]
    Cytometry39                             html  
REDIRECT:topic	 Cytometry39 -> Cytometry39.html [ SUCCESS ]
    Cytometry4                              html  
REDIRECT:topic	 Cytometry4 -> Cytometry4.html [ SUCCESS ]
    Cytometry40                             html  
REDIRECT:topic	 Cytometry40 -> Cytometry40.html [ SUCCESS ]
    Cytometry5                              html  
REDIRECT:topic	 Cytometry5 -> Cytometry5.html [ SUCCESS ]
    Cytometry6                              html  
REDIRECT:topic	 Cytometry6 -> Cytometry6.html [ SUCCESS ]
    Cytometry7                              html  
REDIRECT:topic	 Cytometry7 -> Cytometry7.html [ SUCCESS ]
    Cytometry8                              html  
REDIRECT:topic	 Cytometry8 -> Cytometry8.html [ SUCCESS ]
    Cytometry9                              html  
REDIRECT:topic	 Cytometry9 -> Cytometry9.html [ SUCCESS ]
    buildDatabase                           html  
REDIRECT:topic	 buildDatabase -> buildDatabase.html [ SUCCESS ]
    cytometry.diagnosis                     html  
REDIRECT:topic	 cytometry.diagnosis -> cytometry.diagnosis.html [ SUCCESS ]
    noise.types                             html  
REDIRECT:topic	 noise.types -> noise.types.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'optimalFlowData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'optimalFlowData' as optimalFlowData_1.3.0.zip
* DONE (optimalFlowData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'optimalFlowData' successfully unpacked and MD5 sums checked

Tests output


Example timings

optimalFlowData.Rcheck/examples_i386/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.030.000.03
Cytometry100.010.020.03
Cytometry110.020.000.01
Cytometry120.010.000.01
Cytometry130.010.030.05
Cytometry140.030.000.03
Cytometry150.020.000.02
Cytometry160.010.000.01
Cytometry170.050.030.08
Cytometry180.050.000.04
Cytometry190.030.000.04
Cytometry20.050.020.06
Cytometry200.040.000.05
Cytometry210.070.010.08
Cytometry220.030.000.03
Cytometry230.030.020.05
Cytometry240.030.000.03
Cytometry250.020.010.03
Cytometry260.010.000.01
Cytometry270.090.000.09
Cytometry280.080.020.09
Cytometry290.050.030.08
Cytometry30.020.000.01
Cytometry300.040.030.08
Cytometry310.060.030.10
Cytometry320.050.020.06
Cytometry330.030.010.05
Cytometry340.070.020.08
Cytometry350.040.010.07
Cytometry360.020.000.01
Cytometry370.000.020.02
Cytometry380.010.000.02
Cytometry390.020.000.01
Cytometry40.010.020.04
Cytometry400.050.000.04
Cytometry50.020.000.02
Cytometry60.010.010.03
Cytometry70.020.000.02
Cytometry80.010.000.01
Cytometry90.040.000.03
buildDatabase0.420.100.51
cytometry.diagnosis000
noise.types000

optimalFlowData.Rcheck/examples_x64/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.010.010.03
Cytometry100.010.000.01
Cytometry110.030.000.03
Cytometry120.020.020.03
Cytometry130.010.010.03
Cytometry140.030.020.05
Cytometry150.020.000.01
Cytometry160.000.010.02
Cytometry170.060.000.07
Cytometry180.050.020.06
Cytometry190.010.020.03
Cytometry20.050.010.06
Cytometry200.050.000.05
Cytometry210.040.020.06
Cytometry220.000.030.03
Cytometry230.040.000.03
Cytometry240.010.000.01
Cytometry250.030.000.03
Cytometry260.030.000.03
Cytometry270.070.010.08
Cytometry280.070.020.10
Cytometry290.070.020.08
Cytometry30.010.000.02
Cytometry300.100.000.09
Cytometry310.060.000.06
Cytometry320.060.000.07
Cytometry330.030.010.04
Cytometry340.070.020.08
Cytometry350.040.010.06
Cytometry360.020.000.02
Cytometry370.000.020.02
Cytometry380.010.000.02
Cytometry390.020.000.01
Cytometry40.000.010.02
Cytometry400.010.020.03
Cytometry50.020.000.02
Cytometry60.020.000.01
Cytometry70.010.000.02
Cytometry80.000.010.01
Cytometry90.010.000.01
buildDatabase0.460.070.52
cytometry.diagnosis000
noise.types000