Back to Multiple platform build/check report for BioC 3.13 experimental data
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

CHECK report for msqc1 on riesling1

This page was generated on 2021-01-11 15:59:32 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE msqc1 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 239/385HostnameOS / ArchINSTALLBUILDCHECK
msqc1 1.19.0
Christian Panse
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/msqc1
Branch: master
Last Commit: 3b30289
Last Changed Date: 2020-10-27 10:18:07 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: msqc1
Version: 1.19.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msqc1.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings msqc1_1.19.0.tar.gz
StartedAt: 2021-01-11 11:36:57 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 11:37:24 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 26.2 seconds
RetCode: 0
Status:  OK  
CheckDir: msqc1.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msqc1.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings msqc1_1.19.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/msqc1.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'msqc1/DESCRIPTION' ... OK
* this is package 'msqc1' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'msqc1' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

msqc1.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/msqc1_1.19.0.tar.gz && rm -rf msqc1.buildbin-libdir && mkdir msqc1.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=msqc1.buildbin-libdir msqc1_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL msqc1_1.19.0.zip && rm msqc1_1.19.0.tar.gz msqc1_1.19.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  887k  100  887k    0     0  27.9M      0 --:--:-- --:--:-- --:--:-- 27.9M

install for i386

* installing *source* package 'msqc1' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'msqc1'
    finding HTML links ... done
    msqc1-package                           html  
REDIRECT:topic	 msqc1-package -> msqc1-package.html [ SUCCESS ]
REDIRECT:topic	 msqc1 -> msqc1-package.html [ SUCCESS ]
    msqc1_8rep                              html  
REDIRECT:topic	 msqc1_8rep -> msqc1_8rep.html [ SUCCESS ]
    msqc1_8rep_QEXACTIVEHF_assayDevel       html  
REDIRECT:topic	 msqc1_8rep_QEXACTIVEHF_assayDevel -> msqc1_8rep_QEXACTIVEHF_assayDevel.html [ SUCCESS ]
    msqc1_8rep_tripleTOF5600_assayDevel     html  
REDIRECT:topic	 msqc1_8rep_tripleTOF5600_assayDevel -> msqc1_8rep_tripleTOF5600_assayDevel.html [ SUCCESS ]
    msqc1_dil                               html  
REDIRECT:topic	 msqc1_dil -> msqc1_dil.html [ SUCCESS ]
    msqc1_userstudy                         html  
REDIRECT:topic	 msqc1_userstudy -> msqc1_userstudy.html [ SUCCESS ]
    peptides                                html  
REDIRECT:topic	 peptides -> peptides.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'msqc1' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'msqc1' as msqc1_1.19.0.zip
* DONE (msqc1)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'msqc1' successfully unpacked and MD5 sums checked

Tests output

msqc1.Rcheck/tests_i386/testthat.Rout


R Under development (unstable) (2020-12-30 r79736) -- "Unsuffered Consequences"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> #R
> 
> library(testthat)
> 
> suppressPackageStartupMessages(library(msqc1))
> 
> test_check("msqc1")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
> 
> proc.time()
   user  system elapsed 
   0.62    0.07    0.68 

msqc1.Rcheck/tests_x64/testthat.Rout


R Under development (unstable) (2020-12-30 r79736) -- "Unsuffered Consequences"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> #R
> 
> library(testthat)
> 
> suppressPackageStartupMessages(library(msqc1))
> 
> test_check("msqc1")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
> 
> proc.time()
   user  system elapsed 
   0.50    0.20    0.68 

Example timings

msqc1.Rcheck/examples_i386/msqc1-Ex.timings

nameusersystemelapsed
msqc1-package0.000.010.02
msqc1_8rep0.000.020.02
msqc1_8rep_QEXACTIVEHF_assayDevel000
msqc1_8rep_tripleTOF5600_assayDevel000
msqc1_dil000
msqc1_userstudy000
peptides000

msqc1.Rcheck/examples_x64/msqc1-Ex.timings

nameusersystemelapsed
msqc1-package000
msqc1_8rep000
msqc1_8rep_QEXACTIVEHF_assayDevel000
msqc1_8rep_tripleTOF5600_assayDevel000
msqc1_dil000
msqc1_userstudy000
peptides000