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CHECK report for msdata on riesling1

This page was generated on 2021-01-11 15:59:32 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE msdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 236/385HostnameOS / ArchINSTALLBUILDCHECK
msdata 0.31.1
Steffen Neumann , Laurent Gatto
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/msdata
Branch: master
Last Commit: d1cc52d
Last Changed Date: 2020-12-29 12:36:57 -0500 (Tue, 29 Dec 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: msdata
Version: 0.31.1
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings msdata_0.31.1.tar.gz
StartedAt: 2021-01-11 11:36:48 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 11:38:15 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 86.9 seconds
RetCode: 0
Status:  OK  
CheckDir: msdata.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings msdata_0.31.1.tar.gz
###
##############################################################################
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/msdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'msdata/DESCRIPTION' ... OK
* this is package 'msdata' version '0.31.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'msdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 580.9Mb
  sub-directories of 1Mb or more:
    TripleTOF-SWATH  106.6Mb
    cdf                3.5Mb
    fticr              5.8Mb
    ident              9.4Mb
    iontrap           21.4Mb
    lockmass           4.1Mb
    microtofq         16.8Mb
    mzid               3.9Mb
    proteomics       368.2Mb
    quant              6.8Mb
    sciex             34.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
msdata 5.81    0.3    6.11
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
msdata 6.96   0.29    7.25
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/msdata.Rcheck/00check.log'
for details.



Installation output

msdata.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/msdata_0.31.1.tar.gz && rm -rf msdata.buildbin-libdir && mkdir msdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=msdata.buildbin-libdir msdata_0.31.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL msdata_0.31.1.zip && rm msdata_0.31.1.tar.gz msdata_0.31.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  425M    0 1113k    0     0  5484k      0  0:01:19 --:--:--  0:01:19 5457k
 12  425M   12 54.4M    0     0  47.3M      0  0:00:09  0:00:01  0:00:08 47.2M
 29  425M   29  124M    0     0  57.3M      0  0:00:07  0:00:02  0:00:05 57.3M
 46  425M   46  198M    0     0  62.9M      0  0:00:06  0:00:03  0:00:03 62.8M
 49  425M   49  212M    0     0  50.5M      0  0:00:08  0:00:04  0:00:04 50.5M
 51  425M   51  220M    0     0  41.6M      0  0:00:10  0:00:05  0:00:05 43.0M
 53  425M   53  229M    0     0  36.0M      0  0:00:11  0:00:06  0:00:05 33.5M
 54  425M   54  230M    0     0  32.2M      0  0:00:13  0:00:07  0:00:06 21.3M
 56  425M   56  242M    0     0  29.4M      0  0:00:14  0:00:08  0:00:06 8853k
 59  425M   59  252M    0     0  26.1M      0  0:00:16  0:00:09  0:00:07 7519k
 59  425M   59  254M    0     0  24.9M      0  0:00:17  0:00:10  0:00:07 7047k
 69  425M   69  296M    0     0  26.4M      0  0:00:16  0:00:11  0:00:05 13.8M
 82  425M   82  353M    0     0  28.4M      0  0:00:14  0:00:12  0:00:02 23.1M
 92  425M   92  392M    0     0  29.8M      0  0:00:14  0:00:13  0:00:01 30.3M
100  425M  100  425M    0     0  31.3M      0  0:00:13  0:00:13 --:--:-- 44.0M

install for i386

* installing *source* package 'msdata' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'msdata'
    finding HTML links ... done
    msdata                                  html  
REDIRECT:topic	 msdata -> msdata.html [ SUCCESS ]
REDIRECT:topic	 xs -> msdata.html [ SUCCESS ]
REDIRECT:topic	 x -> msdata.html [ SUCCESS ]
    proteomics                              html  
REDIRECT:topic	 proteomics -> proteomics.html [ SUCCESS ]
REDIRECT:topic	 ident -> proteomics.html [ SUCCESS ]
REDIRECT:topic	 quant -> proteomics.html [ SUCCESS ]
REDIRECT:topic	 fdms3tmt11 -> proteomics.html [ SUCCESS ]
    sciexdata                               html  
REDIRECT:topic	 sciexdata -> sciexdata.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'msdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'msdata' as msdata_0.31.1.zip
* DONE (msdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'msdata' successfully unpacked and MD5 sums checked

Tests output


Example timings

msdata.Rcheck/examples_i386/msdata-Ex.timings

nameusersystemelapsed
msdata5.810.306.11
proteomics0.610.030.69
sciexdata000

msdata.Rcheck/examples_x64/msdata-Ex.timings

nameusersystemelapsed
msdata6.960.297.25
proteomics0.650.070.72
sciexdata000