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CHECK report for msPurityData on riesling1

This page was generated on 2021-01-14 15:59:09 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE msPurityData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 238/385HostnameOS / ArchINSTALLBUILDCHECK
msPurityData 1.19.0
Thomas N. Lawson
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/msPurityData
Branch: master
Last Commit: 22f7e42
Last Changed Date: 2020-10-27 10:19:23 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: msPurityData
Version: 1.19.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msPurityData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings msPurityData_1.19.0.tar.gz
StartedAt: 2021-01-14 11:30:23 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:30:57 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 34.3 seconds
RetCode: 0
Status:  OK  
CheckDir: msPurityData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msPurityData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings msPurityData_1.19.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/msPurityData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'msPurityData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'msPurityData' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'msPurityData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 541.5Mb
  sub-directories of 1Mb or more:
    extdata  541.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/msPurityData.Rcheck/00check.log'
for details.



Installation output

msPurityData.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/msPurityData_1.19.0.tar.gz && rm -rf msPurityData.buildbin-libdir && mkdir msPurityData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=msPurityData.buildbin-libdir msPurityData_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL msPurityData_1.19.0.zip && rm msPurityData_1.19.0.tar.gz msPurityData_1.19.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  233M    0  1212    0     0   2335      0 29:08:03 --:--:-- 29:08:03  2330
 19  233M   19 45.9M    0     0  30.0M      0  0:00:07  0:00:01  0:00:06 30.0M
 27  233M   27 63.1M    0     0  26.1M      0  0:00:08  0:00:02  0:00:06 26.1M
 27  233M   27 64.5M    0     0  18.9M      0  0:00:12  0:00:03  0:00:09 18.9M
 28  233M   28 67.3M    0     0  13.9M      0  0:00:16  0:00:04  0:00:12 13.9M
 35  233M   35 82.2M    0     0  15.2M      0  0:00:15  0:00:05  0:00:10 16.8M
 69  233M   69  163M    0     0  25.5M      0  0:00:09  0:00:06  0:00:03 24.1M
 94  233M   94  220M    0     0  29.8M      0  0:00:07  0:00:07 --:--:-- 31.6M
100  233M  100  233M    0     0  29.8M      0  0:00:07  0:00:07 --:--:-- 38.4M

install for i386

* installing *source* package 'msPurityData' ...
** using staged installation
** inst
** help
*** installing help indices
  converting help for package 'msPurityData'
    finding HTML links ... done
    msPurity-package                        html  
REDIRECT:topic	 msPurityData-package -> msPurity-package.html [ SUCCESS ]
REDIRECT:topic	 msPurityData -> msPurity-package.html [ SUCCESS ]
REDIRECT:file	 msPurity-package.html -> msPurity-package.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'msPurityData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'msPurityData' as msPurityData_1.19.0.zip
* DONE (msPurityData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'msPurityData' successfully unpacked and MD5 sums checked

Tests output


Example timings