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CHECK report for minionSummaryData on riesling1

This page was generated on 2021-01-21 16:01:31 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE minionSummaryData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 226/386HostnameOS / ArchINSTALLBUILDCHECK
minionSummaryData 1.21.0
Mike Smith
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/minionSummaryData
Branch: master
Last Commit: 83f642b
Last Changed Date: 2020-10-27 10:13:32 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: minionSummaryData
Version: 1.21.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:minionSummaryData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings minionSummaryData_1.21.0.tar.gz
StartedAt: 2021-01-21 11:33:37 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:42:26 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 529.2 seconds
RetCode: 0
Status:  OK  
CheckDir: minionSummaryData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:minionSummaryData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings minionSummaryData_1.21.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/minionSummaryData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'minionSummaryData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'minionSummaryData' version '1.21.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'minionSummaryData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 134.7Mb
  sub-directories of 1Mb or more:
    data  134.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/minionSummaryData.Rcheck/00check.log'
for details.



Installation output

minionSummaryData.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/minionSummaryData_1.21.0.tar.gz && rm -rf minionSummaryData.buildbin-libdir && mkdir minionSummaryData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=minionSummaryData.buildbin-libdir minionSummaryData_1.21.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL minionSummaryData_1.21.0.zip && rm minionSummaryData_1.21.0.tar.gz minionSummaryData_1.21.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  134M    0  642k    0     0  1217k      0  0:01:53 --:--:--  0:01:53 1215k
  0  134M    0 1355k    0     0   844k      0  0:02:43  0:00:01  0:02:42  844k
  2  134M    2 2992k    0     0  1198k      0  0:01:54  0:00:02  0:01:52 1198k
 28  134M   28 38.0M    0     0  8889k      0  0:00:15  0:00:04  0:00:11 8889k
 28  134M   28 38.0M    0     0  8311k      0  0:00:16  0:00:04  0:00:12 8311k
 29  134M   29 39.4M    0     0  6874k      0  0:00:20  0:00:05  0:00:15 7435k
 30  134M   30 40.6M    0     0  6234k      0  0:00:22  0:00:06  0:00:16 7940k
 32  134M   32 43.3M    0     0  5613k      0  0:00:24  0:00:07  0:00:17 7653k
 34  134M   34 46.0M    0     0  5410k      0  0:00:25  0:00:08  0:00:17 1894k
 51  134M   51 69.2M    0     0  7391k      0  0:00:18  0:00:09  0:00:09 6513k
 58  134M   58 78.0M    0     0  7617k      0  0:00:18  0:00:10  0:00:08 8558k
 76  134M   76  102M    0     0  9104k      0  0:00:15  0:00:11  0:00:04 12.7M
 78  134M   78  105M    0     0  8635k      0  0:00:15  0:00:12  0:00:03 13.4M
 80  134M   80  108M    0     0  8052k      0  0:00:17  0:00:13  0:00:04 12.2M
 93  134M   93  125M    0     0  8682k      0  0:00:15  0:00:14  0:00:01 10.8M
 95  134M   95  128M    0     0  8159k      0  0:00:16  0:00:16 --:--:-- 9180k
 96  134M   96  129M    0     0  8024k      0  0:00:17  0:00:16  0:00:01 5575k
100  134M  100  134M    0     0  8113k      0  0:00:16  0:00:16 --:--:-- 6653k

install for i386

* installing *source* package 'minionSummaryData' ...
** using staged installation
** data
** help
*** installing help indices
  converting help for package 'minionSummaryData'
    finding HTML links ... done
    minionSummaryData                       html  
REDIRECT:topic	 s.typhi.rep1 -> minionSummaryData.html [ SUCCESS ]
REDIRECT:topic	 s.typhi.rep2 -> minionSummaryData.html [ SUCCESS ]
REDIRECT:topic	 s.typhi.rep3 -> minionSummaryData.html [ SUCCESS ]
REDIRECT:file	 minionSummaryData.html -> minionSummaryData.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'minionSummaryData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'minionSummaryData' as minionSummaryData_1.21.0.zip
* DONE (minionSummaryData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'minionSummaryData' successfully unpacked and MD5 sums checked

Tests output


Example timings