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CHECK report for minfiDataEPIC on riesling1

This page was generated on 2021-01-21 16:01:31 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE minfiDataEPIC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 225/386HostnameOS / ArchINSTALLBUILDCHECK
minfiDataEPIC 1.17.0
Kasper Daniel Hansen
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/minfiDataEPIC
Branch: master
Last Commit: a24474c
Last Changed Date: 2020-10-27 10:20:06 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: minfiDataEPIC
Version: 1.17.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:minfiDataEPIC.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings minfiDataEPIC_1.17.0.tar.gz
StartedAt: 2021-01-21 11:33:20 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:36:45 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 205.1 seconds
RetCode: 0
Status:  OK  
CheckDir: minfiDataEPIC.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:minfiDataEPIC.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings minfiDataEPIC_1.17.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/minfiDataEPIC.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'minfiDataEPIC/DESCRIPTION' ... OK
* this is package 'minfiDataEPIC' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'minfiDataEPIC' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 169.1Mb
  sub-directories of 1Mb or more:
    data     90.7Mb
    extdata  78.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/minfiDataEPIC.Rcheck/00check.log'
for details.



Installation output

minfiDataEPIC.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/minfiDataEPIC_1.17.0.tar.gz && rm -rf minfiDataEPIC.buildbin-libdir && mkdir minfiDataEPIC.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=minfiDataEPIC.buildbin-libdir minfiDataEPIC_1.17.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL minfiDataEPIC_1.17.0.zip && rm minfiDataEPIC_1.17.0.tar.gz minfiDataEPIC_1.17.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  2 69.1M    2 1958k    0     0  2466k      0  0:00:28 --:--:--  0:00:28 2463k
 36 69.1M   36 25.5M    0     0  16.7M      0  0:00:04  0:00:01  0:00:03 16.7M
100 69.1M  100 69.1M    0     0  30.4M      0  0:00:02  0:00:02 --:--:-- 30.4M

install for i386

* installing *source* package 'minfiDataEPIC' ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
  converting help for package 'minfiDataEPIC'
    finding HTML links ... done
    MsetEPIC                                html  
REDIRECT:topic	 MsetEPIC -> MsetEPIC.html [ SUCCESS ]
    RGsetEPIC                               html  
REDIRECT:topic	 RGsetEPIC -> RGsetEPIC.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'minfiDataEPIC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'minfiDataEPIC' as minfiDataEPIC_1.17.0.zip
* DONE (minfiDataEPIC)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'minfiDataEPIC' successfully unpacked and MD5 sums checked

Tests output


Example timings

minfiDataEPIC.Rcheck/examples_i386/minfiDataEPIC-Ex.timings

nameusersystemelapsed
MsetEPIC4.490.084.60
RGsetEPIC2.250.132.37

minfiDataEPIC.Rcheck/examples_x64/minfiDataEPIC-Ex.timings

nameusersystemelapsed
MsetEPIC4.140.114.25
RGsetEPIC2.290.102.37