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CHECK report for miRNATarget on malbec2

This page was generated on 2021-01-21 16:01:14 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE miRNATarget PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 228/386HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.29.0
Y-h. Taguchi
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/miRNATarget
Branch: master
Last Commit: a1cadec
Last Changed Date: 2020-10-27 09:55:35 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  OK 

Summary

Package: miRNATarget
Version: 1.29.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings miRNATarget_1.29.0.tar.gz
StartedAt: 2021-01-21 12:25:21 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 12:27:00 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 99.0 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings miRNATarget_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/miRNATarget.Rcheck’
* using R Under development (unstable) (2021-01-05 r79797)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.



Installation output

miRNATarget.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0150.0000.015
HS_refseq_to_affy_hc_g1100.0010.0040.005
HS_refseq_to_affy_hg_focus0.0180.0000.018
HS_refseq_to_affy_hg_u133_plus_20.0650.0030.068
HS_refseq_to_affy_hg_u133a0.0430.0000.043
HS_refseq_to_affy_hg_u133a_20.0410.0010.042
HS_refseq_to_affy_hg_u133b0.0210.0000.020
HS_refseq_to_affy_hg_u95a0.0270.0000.027
HS_refseq_to_affy_hg_u95av20.0260.0000.026
HS_refseq_to_affy_hg_u95b0.0170.0000.016
HS_refseq_to_affy_hg_u95c0.0160.0000.015
HS_refseq_to_affy_hg_u95d0.0110.0000.012
HS_refseq_to_affy_hg_u95e0.0170.0030.021
HS_refseq_to_affy_huex_1_0_st_v20.9790.0231.003
HS_refseq_to_affy_hugene_1_0_st_v10.0500.0000.051
HS_refseq_to_affy_hugenefl0.0130.0000.014
HS_refseq_to_affy_u133_x3p0.0710.0000.071
HS_refseq_to_agilent_cgh_44b0.0130.0000.012
HS_refseq_to_agilent_wholegenome0.1040.0000.104
HS_refseq_to_canonical_transcript_stable_id0.1260.0000.127
HS_refseq_to_ccds0.0430.0000.042
HS_refseq_to_codelink0.0430.0000.043
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.002
HS_refseq_to_embl0.8100.0150.826
HS_refseq_to_ensembl_exon_id0.0030.0000.003
HS_refseq_to_ensembl_gene_id0.1880.0000.189
HS_refseq_to_ensembl_peptide_id0.0490.0000.049
HS_refseq_to_ensembl_transcript_id0.0570.0000.058
HS_refseq_to_entrezgene0.0540.0030.059
HS_refseq_to_hgnc_id0.0520.0000.052
HS_refseq_to_hgnc_symbol0.0850.0040.088
HS_refseq_to_hgnc_transcript_name0.1630.0000.164
HS_refseq_to_illumina_humanht_120.0670.0000.067
HS_refseq_to_illumina_humanwg_6_v10.0490.0000.048
HS_refseq_to_illumina_humanwg_6_v20.040.000.04
HS_refseq_to_illumina_humanwg_6_v30.0830.0000.083
HS_refseq_to_interpro0.1890.0000.189
HS_refseq_to_ipi0.1220.0030.126
HS_refseq_to_merops0.0050.0010.005
HS_refseq_to_pdb0.1650.0000.165
HS_refseq_to_pfam0.0810.0000.081
HS_refseq_to_phalanx_onearray0.0480.0000.047
HS_refseq_to_protein_id1.3390.0041.343
HS_refseq_to_refseq_dna0.0610.0000.060
HS_refseq_to_refseq_genomic0.0020.0000.001
HS_refseq_to_refseq_peptide0.1040.0000.103
HS_refseq_to_rfam0.0030.0000.002
HS_refseq_to_rfam_gene_name0.0010.0000.001
HS_refseq_to_rfam_transcript_name0.0010.0000.001
HS_refseq_to_smart0.0390.0000.038
HS_refseq_to_tigrfam0.0060.0000.006
HS_refseq_to_ucsc0.0540.0000.054
HS_refseq_to_unigene0.0810.0000.081
HS_refseq_to_uniprot_genename0.0470.0000.047
HS_refseq_to_uniprot_genename_transcript_name0.0010.0000.002
HS_refseq_to_uniprot_sptrembl0.0010.0000.002
HS_refseq_to_uniprot_swissprot0.0010.0000.001
HS_refseq_to_uniprot_swissprot_accession0.0020.0000.001
HS_refseq_to_wikigene_id0.0010.0000.001
HS_refseq_to_wikigene_name0.0530.0000.053
MM_conv_id0.0030.0000.003
MM_refseq_to_affy_mg_u74a0.0170.0000.017
MM_refseq_to_affy_mg_u74av20.0170.0000.017
MM_refseq_to_affy_mg_u74b0.0130.0000.014
MM_refseq_to_affy_mg_u74bv20.0140.0000.014
MM_refseq_to_affy_mg_u74c0.0050.0000.005
MM_refseq_to_affy_mg_u74cv20.0070.0000.007
MM_refseq_to_affy_moe430a0.0360.0000.035
MM_refseq_to_affy_moe430b0.0170.0000.016
MM_refseq_to_affy_moex_1_0_st_v10.4250.0070.432
MM_refseq_to_affy_mogene_1_0_st_v10.0460.0010.045
MM_refseq_to_affy_mouse430_20.0480.0000.047
MM_refseq_to_affy_mouse430a_20.0340.0000.034
MM_refseq_to_affy_mu11ksuba0.0110.0000.011
MM_refseq_to_affy_mu11ksubb0.0070.0000.008
MM_refseq_to_agilent_wholegenome0.0620.0030.066
MM_refseq_to_canonical_transcript_stable_id0.0750.0000.075
MM_refseq_to_ccds0.0470.0040.051
MM_refseq_to_codelink0.0340.0000.035
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0010.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0020.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0020.0000.001
MM_refseq_to_embl0.3380.0030.342
MM_refseq_to_ensembl_exon_id0.0020.0010.001
MM_refseq_to_ensembl_gene_id0.1660.0000.166
MM_refseq_to_ensembl_peptide_id0.0380.0000.038
MM_refseq_to_ensembl_transcript_id0.040.000.04
MM_refseq_to_entrezgene0.0360.0000.036
MM_refseq_to_fantom0.1110.0000.112
MM_refseq_to_illumina_mousewg_6_v10.0540.0000.053
MM_refseq_to_illumina_mousewg_6_v20.0540.0000.054
MM_refseq_to_interpro0.1550.0000.155
MM_refseq_to_ipi0.0020.0000.001
MM_refseq_to_merops0.0040.0000.004
MM_refseq_to_mgi_id0.0420.0000.043
MM_refseq_to_mgi_symbol0.0470.0000.047
MM_refseq_to_mgi_transcript_name0.0490.0000.049
MM_refseq_to_pdb0.0120.0000.012
MM_refseq_to_pfam0.0660.0030.071
MM_refseq_to_phalanx_onearray0.0410.0000.041
MM_refseq_to_protein_id0.3320.0000.332
MM_refseq_to_refseq_dna0.0530.0040.057
MM_refseq_to_refseq_peptide0.0950.0000.095
MM_refseq_to_rfam0.0020.0000.002
MM_refseq_to_rfam_gene_name0.0020.0000.001
MM_refseq_to_rfam_transcript_name0.0010.0000.001
MM_refseq_to_smart0.0340.0000.035
MM_refseq_to_tigrfam0.0010.0030.005
MM_refseq_to_ucsc0.0480.0000.047
MM_refseq_to_unigene0.0560.0000.055
MM_refseq_to_uniprot_genename0.0390.0000.039
MM_refseq_to_uniprot_genename_transcript_name0.0010.0000.001
MM_refseq_to_uniprot_sptrembl0.0010.0000.001
MM_refseq_to_uniprot_swissprot0.0010.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0010.0000.002
MM_refseq_to_wikigene_id0.0020.0000.001
MM_refseq_to_wikigene_name0.0360.0000.035
TBL21.4140.0721.485
TBL2_HS1.6140.1031.717
TBL2_MM0.9230.1191.044
conv_id0.0020.0000.002
id_conv0.0350.0000.036