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CHECK report for macrophage on riesling1

This page was generated on 2021-01-14 15:59:08 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE macrophage PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 205/385HostnameOS / ArchINSTALLBUILDCHECK
macrophage 1.7.0
Michael Love
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/macrophage
Branch: master
Last Commit: 24b8351
Last Changed Date: 2020-10-27 10:29:13 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: macrophage
Version: 1.7.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:macrophage.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings macrophage_1.7.0.tar.gz
StartedAt: 2021-01-14 11:26:21 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:26:58 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 36.6 seconds
RetCode: 0
Status:  OK  
CheckDir: macrophage.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:macrophage.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings macrophage_1.7.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/macrophage.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'macrophage/DESCRIPTION' ... OK
* this is package 'macrophage' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'macrophage' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 514.5Mb
  sub-directories of 1Mb or more:
    data       8.5Mb
    extdata  505.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/macrophage.Rcheck/00check.log'
for details.



Installation output

macrophage.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/macrophage_1.7.0.tar.gz && rm -rf macrophage.buildbin-libdir && mkdir macrophage.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=macrophage.buildbin-libdir macrophage_1.7.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL macrophage_1.7.0.zip && rm macrophage_1.7.0.tar.gz macrophage_1.7.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  511M    0 15811    0     0  37378      0  3:59:05 --:--:--  3:59:05 37290
  0  511M    0 1834k    0     0  1290k      0  0:06:45  0:00:01  0:06:44 1289k
  0  511M    0 4381k    0     0  1713k      0  0:05:05  0:00:02  0:05:03 1712k
  1  511M    1 8361k    0     0  2423k      0  0:03:36  0:00:03  0:03:33 2423k
  4  511M    4 22.0M    0     0  5085k      0  0:01:42  0:00:04  0:01:38 5083k
 11  511M   11 58.8M    0     0  10.8M      0  0:00:46  0:00:05  0:00:41 11.8M
 15  511M   15 79.2M    0     0  12.3M      0  0:00:41  0:00:06  0:00:35 15.5M
 16  511M   16 84.8M    0     0  10.9M      0  0:00:46  0:00:07  0:00:39 15.4M
 17  511M   17 87.7M    0     0  10.3M      0  0:00:49  0:00:08  0:00:41 15.9M
 17  511M   17 90.4M    0     0  9818k      0  0:00:53  0:00:09  0:00:44 13.6M
 23  511M   23  120M    0     0  11.5M      0  0:00:44  0:00:10  0:00:34 12.2M
 29  511M   29  149M    0     0  13.1M      0  0:00:38  0:00:11  0:00:27 14.0M
 30  511M   30  154M    0     0  12.4M      0  0:00:41  0:00:12  0:00:29 14.9M
 31  511M   31  158M    0     0  11.8M      0  0:00:43  0:00:13  0:00:30 14.2M
 32  511M   32  165M    0     0  11.4M      0  0:00:44  0:00:14  0:00:30 15.0M
 44  511M   44  229M    0     0  14.6M      0  0:00:34  0:00:15  0:00:19 20.7M
 45  511M   45  230M    0     0  14.0M      0  0:00:36  0:00:16  0:00:20 16.2M
 45  511M   45  232M    0     0  13.1M      0  0:00:38  0:00:17  0:00:21 15.0M
 45  511M   45  233M    0     0  12.6M      0  0:00:40  0:00:18  0:00:22 14.9M
 46  511M   46  235M    0     0  12.1M      0  0:00:42  0:00:19  0:00:23 14.0M
 58  511M   58  300M    0     0  14.7M      0  0:00:34  0:00:20  0:00:14 14.9M
 67  511M   67  343M    0     0  16.0M      0  0:00:31  0:00:21  0:00:10 22.5M
 81  511M   81  418M    0     0  18.7M      0  0:00:27  0:00:22  0:00:05 39.1M
 94  511M   94  481M    0     0  20.5M      0  0:00:24  0:00:23  0:00:01 50.1M
100  511M  100  511M    0     0  21.4M      0  0:00:23  0:00:23 --:--:-- 62.8M

install for i386

* installing *source* package 'macrophage' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'macrophage'
    finding HTML links ... done
    gse                                     html  
REDIRECT:topic	 gse -> gse.html [ SUCCESS ]
    macrophage-package                      html  
REDIRECT:topic	 macrophage-package -> macrophage-package.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'macrophage' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'macrophage' as macrophage_1.7.0.zip
* DONE (macrophage)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'macrophage' successfully unpacked and MD5 sums checked

Tests output


Example timings