Back to Multiple platform build/check report for BioC 3.13 experimental data
ABCDEFGHIJK[L]MNOPQRSTUVWXYZ

CHECK report for lydata on riesling1

This page was generated on 2021-01-14 15:59:08 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE lydata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 203/385HostnameOS / ArchINSTALLBUILDCHECK
lydata 1.17.0
Alex Pickering
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/lydata
Branch: master
Last Commit: 7110cf1
Last Changed Date: 2020-10-27 10:20:11 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: lydata
Version: 1.17.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:lydata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings lydata_1.17.0.tar.gz
StartedAt: 2021-01-14 11:26:14 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:26:40 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 25.9 seconds
RetCode: 0
Status:  OK  
CheckDir: lydata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:lydata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings lydata_1.17.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/lydata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'lydata/DESCRIPTION' ... OK
* this is package 'lydata' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'lydata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 323.9Mb
  sub-directories of 1Mb or more:
    extdata  323.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/lydata.Rcheck/00check.log'
for details.



Installation output

lydata.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/lydata_1.17.0.tar.gz && rm -rf lydata.buildbin-libdir && mkdir lydata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=lydata.buildbin-libdir lydata_1.17.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL lydata_1.17.0.zip && rm lydata_1.17.0.tar.gz lydata_1.17.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  160M    0  1212    0     0   1936      0 24:11:20 --:--:-- 24:11:20  1936
 31  160M   31 50.2M    0     0  36.3M      0  0:00:04  0:00:01  0:00:03 36.2M
 89  160M   89  143M    0     0  60.0M      0  0:00:02  0:00:02 --:--:-- 60.0M
100  160M  100  160M    0     0  63.2M      0  0:00:02  0:00:02 --:--:-- 63.2M

install for i386

* installing *source* package 'lydata' ...
** using staged installation
** inst
** help
No man pages found in package  'lydata' 
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'lydata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'lydata' as lydata_1.17.0.zip
* DONE (lydata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'lydata' successfully unpacked and MD5 sums checked

Tests output


Example timings