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CHECK report for lungExpression on riesling1

This page was generated on 2021-03-01 15:56:10 -0500 (Mon, 01 Mar 2021).

To the developers/maintainers of the lungExpression package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 203/391HostnameOS / ArchINSTALLBUILDCHECK
lungExpression 0.29.0
Robert Scharpf
Snapshot Date: 2021-03-01 09:00:05 -0500 (Mon, 01 Mar 2021)
URL: https://git.bioconductor.org/packages/lungExpression
Branch: master
Last Commit: 3d6404a
Last Changed Date: 2020-10-27 09:47:18 -0500 (Tue, 27 Oct 2020)
rex3Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
riesling1Windows Server 2019 Standard / x64  OK    OK    OK  

Summary

Package: lungExpression
Version: 0.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:lungExpression.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings lungExpression_0.29.0.tar.gz
StartedAt: 2021-03-01 11:41:54 -0500 (Mon, 01 Mar 2021)
EndedAt: 2021-03-01 11:42:27 -0500 (Mon, 01 Mar 2021)
EllapsedTime: 33.5 seconds
RetCode: 0
Status:   OK   
CheckDir: lungExpression.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:lungExpression.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings lungExpression_0.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/lungExpression.Rcheck'
* using R Under development (unstable) (2021-02-08 r79971)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'lungExpression/DESCRIPTION' ... OK
* this is package 'lungExpression' version '0.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'lungExpression' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   5.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: harvard.Rd:10-11: Dropping empty section \format
prepare_Rd: harvard.Rd:17-18: Dropping empty section \source
prepare_Rd: michigan.Rd:10-11: Dropping empty section \format
prepare_Rd: michigan.Rd:17-18: Dropping empty section \source
prepare_Rd: stanford.Rd:9-10: Dropping empty section \format
prepare_Rd: stanford.Rd:16-18: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/lungExpression.Rcheck/00check.log'
for details.



Installation output

lungExpression.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.173.35/BBS/3.13/data-experiment/src/contrib/lungExpression_0.29.0.tar.gz && rm -rf lungExpression.buildbin-libdir && mkdir lungExpression.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=lungExpression.buildbin-libdir lungExpression_0.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL lungExpression_0.29.0.zip && rm lungExpression_0.29.0.tar.gz lungExpression_0.29.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3 5817k    3  190k    0     0   402k      0  0:00:14 --:--:--  0:00:14  401k
 58 5817k   58 3376k    0     0  2274k      0  0:00:02  0:00:01  0:00:01 2273k
100 5817k  100 5817k    0     0  3378k      0  0:00:01  0:00:01 --:--:-- 3376k

install for i386

* installing *source* package 'lungExpression' ...
** using staged installation
** data
** help
*** installing help indices
  converting help for package 'lungExpression'
    finding HTML links ... done
    harvard                                 html  
REDIRECT:topic	 harvard -> harvard.html [ SUCCESS ]
    michigan                                html  
REDIRECT:topic	 michigan -> michigan.html [ SUCCESS ]
    stanford                                html  
REDIRECT:topic	 stanford -> stanford.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'lungExpression' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'lungExpression' as lungExpression_0.29.0.zip
* DONE (lungExpression)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'lungExpression' successfully unpacked and MD5 sums checked

Tests output


Example timings

lungExpression.Rcheck/examples_i386/lungExpression-Ex.timings

nameusersystemelapsed
harvard0.030.000.03
michigan0.020.000.02
stanford0.010.000.02

lungExpression.Rcheck/examples_x64/lungExpression-Ex.timings

nameusersystemelapsed
harvard0.050.000.05
michigan0.010.000.02
stanford0.020.000.02