Bioconductor Package Maintainer
| Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021) |
| URL: https://git.bioconductor.org/packages/hgu2beta7 |
| Branch: master |
| Last Commit: 1142ddf |
| Last Changed Date: 2020-10-27 09:46:31 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-14 15:59:08 -0500 (Thu, 14 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE hgu2beta7 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 171/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| hgu2beta7 1.31.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ WARNINGS ] |
| Package: hgu2beta7 |
| Version: 1.31.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hgu2beta7.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings hgu2beta7_1.31.0.tar.gz |
| StartedAt: 2021-01-14 11:23:01 -0500 (Thu, 14 Jan 2021) |
| EndedAt: 2021-01-14 11:23:26 -0500 (Thu, 14 Jan 2021) |
| EllapsedTime: 25.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: hgu2beta7.Rcheck |
| Warnings: 3 |
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### Running command:
###
### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hgu2beta7.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings hgu2beta7_1.31.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/hgu2beta7.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hgu2beta7/DESCRIPTION' ... OK
* this is package 'hgu2beta7' version '1.31.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hgu2beta7' can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.1Mb
sub-directories of 1Mb or more:
data 6.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
hgu2beta7: no visible binding for global variable 'hgu2beta7QC'
Undefined global functions or variables:
hgu2beta7QC
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'library' or 'require' call not declared from: 'annotate'
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
'Rdata.rdb' 'Rdata.rds' 'Rdata.rdx'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 3 NOTEs
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/hgu2beta7.Rcheck/00check.log'
for details.
hgu2beta7.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/hgu2beta7_1.31.0.tar.gz && rm -rf hgu2beta7.buildbin-libdir && mkdir hgu2beta7.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hgu2beta7.buildbin-libdir hgu2beta7_1.31.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL hgu2beta7_1.31.0.zip && rm hgu2beta7_1.31.0.tar.gz hgu2beta7_1.31.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 6561k 0 1215 0 0 1622 0 1:09:02 --:--:-- 1:09:02 1620
100 6561k 100 6561k 0 0 7070k 0 --:--:-- --:--:-- --:--:-- 7070k
install for i386
* installing *source* package 'hgu2beta7' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'hgu2beta7'
finding HTML links ... done
hgu2beta7 html
REDIRECT:topic hgu2beta7 -> hgu2beta7.html [ SUCCESS ]
hgu2beta7ACCNUM html
REDIRECT:topic hgu2beta7ACCNUM -> hgu2beta7ACCNUM.html [ SUCCESS ]
hgu2beta7CHR html
REDIRECT:topic hgu2beta7CHR -> hgu2beta7CHR.html [ SUCCESS ]
hgu2beta7CHRLENGTHS html
REDIRECT:topic hgu2beta7CHRLENGTHS -> hgu2beta7CHRLENGTHS.html [ SUCCESS ]
hgu2beta7CHRLOC html
REDIRECT:topic hgu2beta7CHRLOC -> hgu2beta7CHRLOC.html [ SUCCESS ]
hgu2beta7ENZYME html
REDIRECT:topic hgu2beta7ENZYME -> hgu2beta7ENZYME.html [ SUCCESS ]
hgu2beta7ENZYME2PROBE html
REDIRECT:topic hgu2beta7ENZYME2PROBE -> hgu2beta7ENZYME2PROBE.html [ SUCCESS ]
hgu2beta7GENENAME html
REDIRECT:topic hgu2beta7GENENAME -> hgu2beta7GENENAME.html [ SUCCESS ]
hgu2beta7GO html
REDIRECT:topic hgu2beta7GO -> hgu2beta7GO.html [ SUCCESS ]
hgu2beta7GO2ALLPROBES html
REDIRECT:topic hgu2beta7GO2ALLPROBES -> hgu2beta7GO2ALLPROBES.html [ SUCCESS ]
hgu2beta7GO2PROBE html
REDIRECT:topic hgu2beta7GO2PROBE -> hgu2beta7GO2PROBE.html [ SUCCESS ]
hgu2beta7GRIF html
REDIRECT:topic hgu2beta7GRIF -> hgu2beta7GRIF.html [ SUCCESS ]
hgu2beta7LOCUSID html
REDIRECT:topic hgu2beta7LOCUSID -> hgu2beta7LOCUSID.html [ SUCCESS ]
hgu2beta7MAP html
REDIRECT:topic hgu2beta7MAP -> hgu2beta7MAP.html [ SUCCESS ]
hgu2beta7OMIM html
REDIRECT:topic hgu2beta7OMIM -> hgu2beta7OMIM.html [ SUCCESS ]
hgu2beta7ORGANISM html
REDIRECT:topic hgu2beta7ORGANISM -> hgu2beta7ORGANISM.html [ SUCCESS ]
hgu2beta7PATH html
REDIRECT:topic hgu2beta7PATH -> hgu2beta7PATH.html [ SUCCESS ]
hgu2beta7PATH2PROBE html
REDIRECT:topic hgu2beta7PATH2PROBE -> hgu2beta7PATH2PROBE.html [ SUCCESS ]
hgu2beta7PMID html
REDIRECT:topic hgu2beta7PMID -> hgu2beta7PMID.html [ SUCCESS ]
hgu2beta7PMID2PROBE html
REDIRECT:topic hgu2beta7PMID2PROBE -> hgu2beta7PMID2PROBE.html [ SUCCESS ]
hgu2beta7QC html
REDIRECT:topic hgu2beta7QC -> hgu2beta7QC.html [ SUCCESS ]
REDIRECT:topic hgu2beta7MAPCOUNTS -> hgu2beta7QC.html [ SUCCESS ]
hgu2beta7REFSEQ html
REDIRECT:topic hgu2beta7REFSEQ -> hgu2beta7REFSEQ.html [ SUCCESS ]
hgu2beta7SUMFUNC html
REDIRECT:topic hgu2beta7SUMFUNC -> hgu2beta7SUMFUNC.html [ SUCCESS ]
hgu2beta7SYMBOL html
REDIRECT:topic hgu2beta7SYMBOL -> hgu2beta7SYMBOL.html [ SUCCESS ]
hgu2beta7UNIGENE html
REDIRECT:topic hgu2beta7UNIGENE -> hgu2beta7UNIGENE.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'hgu2beta7' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hgu2beta7' as hgu2beta7_1.31.0.zip
* DONE (hgu2beta7)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'hgu2beta7' successfully unpacked and MD5 sums checked
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hgu2beta7.Rcheck/examples_i386/hgu2beta7-Ex.timings
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hgu2beta7.Rcheck/examples_x64/hgu2beta7-Ex.timings
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