Back to Multiple platform build/check report for BioC 3.13 experimental data
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

CHECK report for grndata on riesling1

This page was generated on 2021-01-21 16:01:29 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE grndata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 146/386HostnameOS / ArchINSTALLBUILDCHECK
grndata 1.23.0
Pau Bellot
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/grndata
Branch: master
Last Commit: bd81c00
Last Changed Date: 2020-10-27 10:11:46 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: grndata
Version: 1.23.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:grndata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings grndata_1.23.0.tar.gz
StartedAt: 2021-01-21 11:25:40 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:26:08 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 27.9 seconds
RetCode: 0
Status:  OK  
CheckDir: grndata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:grndata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings grndata_1.23.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/grndata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'grndata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'grndata' version '1.23.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'grndata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 54.4Mb
  sub-directories of 1Mb or more:
    data  54.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/grndata.Rcheck/00check.log'
for details.



Installation output

grndata.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/grndata_1.23.0.tar.gz && rm -rf grndata.buildbin-libdir && mkdir grndata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=grndata.buildbin-libdir grndata_1.23.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL grndata_1.23.0.zip && rm grndata_1.23.0.tar.gz grndata_1.23.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 37 30.1M   37 11.2M    0     0  22.8M      0  0:00:01 --:--:--  0:00:01 22.8M
100 30.1M  100 30.1M    0     0  40.5M      0 --:--:-- --:--:-- --:--:-- 40.5M

install for i386

* installing *source* package 'grndata' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'grndata'
    finding HTML links ... done
    Availabledata                           html  
REDIRECT:topic	 Availabledata -> Availabledata.html [ SUCCESS ]
    getData                                 html  
REDIRECT:topic	 getData -> getData.html [ SUCCESS ]
    gnw1565.data                            html  
REDIRECT:topic	 gnw1565.data -> gnw1565.data.html [ SUCCESS ]
    gnw1565.net                             html  
REDIRECT:topic	 gnw1565.net -> gnw1565.net.html [ SUCCESS ]
    gnw2000.data                            html  
REDIRECT:topic	 gnw2000.data -> gnw2000.data.html [ SUCCESS ]
    gnw2000.net                             html  
REDIRECT:topic	 gnw2000.net -> gnw2000.net.html [ SUCCESS ]
    rogers1000.data                         html  
REDIRECT:topic	 rogers1000.data -> rogers1000.data.html [ SUCCESS ]
    rogers1000.net                          html  
REDIRECT:topic	 rogers1000.net -> rogers1000.net.html [ SUCCESS ]
    syntren1000.data                        html  
REDIRECT:topic	 syntren1000.data -> syntren1000.data.html [ SUCCESS ]
    syntren1000.net                         html  
REDIRECT:topic	 syntren1000.net -> syntren1000.net.html [ SUCCESS ]
    syntren300.data                         html  
REDIRECT:topic	 syntren300.data -> syntren300.data.html [ SUCCESS ]
    syntren300.net                          html  
REDIRECT:topic	 syntren300.net -> syntren300.net.html [ SUCCESS ]
    toy.data                                html  
REDIRECT:topic	 toy.data -> toy.data.html [ SUCCESS ]
    toy.net                                 html  
REDIRECT:topic	 toy.net -> toy.net.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'grndata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'grndata' as grndata_1.23.0.zip
* DONE (grndata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'grndata' successfully unpacked and MD5 sums checked

Tests output

grndata.Rcheck/tests_i386/runTests.Rout


R Under development (unstable) (2020-12-30 r79736) -- "Unsuffered Consequences"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("grndata")


RUNIT TEST PROTOCOL -- Thu Jan 21 11:26:00 2021 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
grndata RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   1.04    0.17    1.21 

grndata.Rcheck/tests_x64/runTests.Rout


R Under development (unstable) (2020-12-30 r79736) -- "Unsuffered Consequences"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("grndata")


RUNIT TEST PROTOCOL -- Thu Jan 21 11:26:01 2021 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
grndata RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   1.01    0.20    1.21 

Example timings

grndata.Rcheck/examples_i386/grndata-Ex.timings

nameusersystemelapsed
Availabledata000
getData0.080.020.10
gnw1565.data0.170.000.18
gnw1565.net0.060.030.09
gnw2000.data0.240.010.25
gnw2000.net0.110.020.13
rogers1000.data0.030.000.03
rogers1000.net0.030.000.03
syntren1000.data0.070.000.06
syntren1000.net0.030.000.03
syntren300.data0.010.000.02
syntren300.net000
toy.data000
toy.net0.020.000.02

grndata.Rcheck/examples_x64/grndata-Ex.timings

nameusersystemelapsed
Availabledata000
getData0.080.010.09
gnw1565.data0.150.020.17
gnw1565.net0.080.010.09
gnw2000.data0.190.050.23
gnw2000.net0.120.000.12
rogers1000.data0.030.000.03
rogers1000.net0.020.020.03
syntren1000.data0.050.000.05
syntren1000.net0.010.010.03
syntren300.data0.000.020.01
syntren300.net000
toy.data000
toy.net0.020.000.01