Back to Multiple platform build/check report for BioC 3.13 experimental data
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

CHECK report for geneLenDataBase on malbec2

This page was generated on 2021-01-14 15:59:02 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE geneLenDataBase PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 139/385HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.27.0
Matthew Young , Nadia Davidson
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: master
Last Commit: 3ec14d5
Last Changed Date: 2020-10-27 09:51:48 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  WARNINGS 

Summary

Package: geneLenDataBase
Version: 1.27.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings geneLenDataBase_1.27.0.tar.gz
StartedAt: 2021-01-14 12:09:41 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 12:20:24 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 642.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings geneLenDataBase_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/geneLenDataBase.Rcheck’
* using R Under development (unstable) (2021-01-05 r79797)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.27.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.1440.0040.148
anoCar1.genscan.LENGTH0.0560.0000.055
anoCar1.xenoRefGene.LENGTH0.9580.0040.963
anoGam1.ensGene.LENGTH0.0560.0080.065
anoGam1.geneid.LENGTH0.0490.0000.049
anoGam1.genscan.LENGTH0.0460.0000.046
apiMel1.genscan.LENGTH0.040.000.04
apiMel2.ensGene.LENGTH0.1130.0040.118
apiMel2.geneid.LENGTH0.1580.0010.160
apiMel2.genscan.LENGTH0.0360.0030.037
aplCal1.xenoRefGene.LENGTH0.5780.0000.578
bosTau2.geneSymbol.LENGTH0.0450.0000.045
bosTau2.geneid.LENGTH0.2580.0080.266
bosTau2.genscan.LENGTH0.1380.0000.139
bosTau2.refGene.LENGTH0.0360.0000.037
bosTau2.sgpGene.LENGTH0.1070.0000.107
bosTau3.ensGene.LENGTH0.0920.0000.092
bosTau3.geneSymbol.LENGTH0.0330.0000.032
bosTau3.geneid.LENGTH0.1110.0000.111
bosTau3.genscan.LENGTH0.0760.0010.077
bosTau3.refGene.LENGTH0.0340.0030.037
bosTau3.sgpGene.LENGTH0.1000.0000.101
bosTau4.ensGene.LENGTH0.1230.0000.123
bosTau4.geneSymbol.LENGTH0.0340.0000.034
bosTau4.genscan.LENGTH0.0740.0000.073
bosTau4.nscanGene.LENGTH0.0310.0000.031
bosTau4.refGene.LENGTH0.0290.0040.033
braFlo1.xenoRefGene.LENGTH0.4210.0000.421
caeJap1.xenoRefGene.LENGTH0.40.00.4
caePb1.xenoRefGene.LENGTH0.5290.0040.533
caePb2.xenoRefGene.LENGTH0.5170.0080.524
caeRem2.xenoRefGene.LENGTH0.5750.0000.575
caeRem3.xenoRefGene.LENGTH0.4160.0000.415
calJac1.genscan.LENGTH0.0950.0000.094
calJac1.nscanGene.LENGTH0.1140.0000.113
calJac1.xenoRefGene.LENGTH0.9340.0040.938
canFam1.ensGene.LENGTH0.1250.0000.126
canFam1.geneSymbol.LENGTH0.0060.0000.006
canFam1.genscan.LENGTH0.0650.0000.065
canFam1.nscanGene.LENGTH0.2170.0040.221
canFam1.refGene.LENGTH0.0050.0000.005
canFam1.xenoRefGene.LENGTH0.5730.0000.573
canFam2.ensGene.LENGTH0.0950.0000.095
canFam2.geneSymbol.LENGTH0.0060.0000.006
canFam2.genscan.LENGTH0.0660.0000.066
canFam2.nscanGene.LENGTH0.0690.0000.069
canFam2.refGene.LENGTH0.0050.0000.006
canFam2.xenoRefGene.LENGTH0.7430.0000.743
cavPor3.ensGene.LENGTH0.0870.0000.087
cavPor3.genscan.LENGTH0.0950.0040.099
cavPor3.nscanGene.LENGTH0.0680.0000.069
cavPor3.xenoRefGene.LENGTH1.3220.0001.322
cb1.xenoRefGene.LENGTH0.4610.0000.460
cb3.xenoRefGene.LENGTH0.350.000.35
ce2.geneSymbol.LENGTH0.0680.0000.068
ce2.geneid.LENGTH0.0600.0000.059
ce2.refGene.LENGTH0.0650.0040.068
ce4.geneSymbol.LENGTH0.0730.0000.072
ce4.refGene.LENGTH0.0690.0000.068
ce4.xenoRefGene.LENGTH0.0930.0010.094
ce6.ensGene.LENGTH0.1010.0030.103
ce6.geneSymbol.LENGTH0.0680.0000.067
ce6.refGene.LENGTH0.0670.0000.067
ce6.xenoRefGene.LENGTH0.0810.0000.082
ci1.geneSymbol.LENGTH0.0050.0000.005
ci1.refGene.LENGTH0.0050.0000.005
ci1.xenoRefGene.LENGTH0.1770.0000.177
ci2.ensGene.LENGTH0.0620.0000.063
ci2.geneSymbol.LENGTH0.0050.0000.005
ci2.refGene.LENGTH0.0040.0000.005
ci2.xenoRefGene.LENGTH0.3930.0000.394
danRer3.ensGene.LENGTH0.1440.0000.145
danRer3.geneSymbol.LENGTH0.0610.0040.064
danRer3.refGene.LENGTH0.0540.0000.053
danRer4.ensGene.LENGTH0.1770.0040.180
danRer4.geneSymbol.LENGTH0.0740.0000.073
danRer4.genscan.LENGTH0.0670.0000.067
danRer4.nscanGene.LENGTH0.0970.0000.097
danRer4.refGene.LENGTH0.0520.0000.053
danRer5.ensGene.LENGTH0.1480.0000.148
danRer5.geneSymbol.LENGTH0.0570.0000.056
danRer5.refGene.LENGTH0.0490.0000.048
danRer5.vegaGene.LENGTH0.050.000.05
danRer5.vegaPseudoGene.LENGTH0.0030.0000.003
danRer6.ensGene.LENGTH0.1370.0000.136
danRer6.geneSymbol.LENGTH0.0560.0000.056
danRer6.refGene.LENGTH0.0510.0000.052
danRer6.xenoRefGene.LENGTH0.7010.0040.705
dm1.geneSymbol.LENGTH0.0680.0000.067
dm1.genscan.LENGTH0.0270.0000.027
dm1.refGene.LENGTH0.0640.0000.065
dm2.geneSymbol.LENGTH0.0720.0000.073
dm2.geneid.LENGTH0.0430.0000.044
dm2.genscan.LENGTH0.0240.0040.028
dm2.nscanGene.LENGTH0.0690.0000.068
dm2.refGene.LENGTH0.0680.0000.068
dm3.geneSymbol.LENGTH0.0790.0000.080
dm3.nscanPasaGene.LENGTH0.0580.0000.058
dm3.refGene.LENGTH0.0670.0000.067
dp2.genscan.LENGTH0.0340.0000.034
dp2.xenoRefGene.LENGTH0.2310.0000.231
dp3.geneid.LENGTH0.0440.0000.045
dp3.genscan.LENGTH0.0290.0000.029
dp3.xenoRefGene.LENGTH0.1180.0040.121
droAna1.geneid.LENGTH0.0720.0080.079
droAna1.genscan.LENGTH0.0240.0000.023
droAna1.xenoRefGene.LENGTH0.3630.0040.366
droAna2.genscan.LENGTH0.0530.0000.052
droAna2.xenoRefGene.LENGTH0.4650.0040.468
droEre1.genscan.LENGTH0.0330.0000.033
droEre1.xenoRefGene.LENGTH0.3630.0000.362
droGri1.genscan.LENGTH0.0470.0000.046
droGri1.xenoRefGene.LENGTH0.3490.0000.348
droMoj1.geneid.LENGTH0.1370.0000.137
droMoj1.genscan.LENGTH0.060.000.06
droMoj1.xenoRefGene.LENGTH0.3030.0040.308
droMoj2.genscan.LENGTH0.0340.0040.038
droMoj2.xenoRefGene.LENGTH0.3490.0000.349
droPer1.genscan.LENGTH0.0420.0000.043
droPer1.xenoRefGene.LENGTH0.3440.0000.344
droSec1.genscan.LENGTH0.0320.0000.032
droSec1.xenoRefGene.LENGTH0.3560.0040.360
droSim1.geneid.LENGTH0.0400.0000.039
droSim1.genscan.LENGTH0.0260.0000.026
droSim1.xenoRefGene.LENGTH0.2370.0000.238
droVir1.geneid.LENGTH0.1160.0000.117
droVir1.genscan.LENGTH0.0460.0000.047
droVir1.xenoRefGene.LENGTH0.3140.0000.313
droVir2.genscan.LENGTH0.0370.0040.040
droVir2.xenoRefGene.LENGTH0.5380.0000.538
droYak1.geneid.LENGTH0.0500.0040.054
droYak1.genscan.LENGTH0.0350.0000.036
droYak1.xenoRefGene.LENGTH0.3080.0000.309
droYak2.genscan.LENGTH0.0440.0000.044
droYak2.xenoRefGene.LENGTH0.4590.0000.459
equCab1.geneSymbol.LENGTH0.0020.0040.007
equCab1.geneid.LENGTH0.1090.0000.110
equCab1.nscanGene.LENGTH0.050.000.05
equCab1.refGene.LENGTH0.0060.0000.006
equCab1.sgpGene.LENGTH0.0880.0000.088
equCab2.ensGene.LENGTH0.1110.0000.111
equCab2.geneSymbol.LENGTH0.0070.0000.007
equCab2.nscanGene.LENGTH0.0560.0000.056
equCab2.refGene.LENGTH0.0070.0000.006
equCab2.xenoRefGene.LENGTH0.6730.0040.676
felCat3.ensGene.LENGTH0.1150.0000.114
felCat3.geneSymbol.LENGTH0.0040.0000.004
felCat3.geneid.LENGTH0.8090.0160.825
felCat3.genscan.LENGTH0.120.000.12
felCat3.nscanGene.LENGTH0.0890.0000.089
felCat3.refGene.LENGTH0.0000.0030.004
felCat3.sgpGene.LENGTH0.1450.0040.149
felCat3.xenoRefGene.LENGTH1.4190.0001.419
fr1.ensGene.LENGTH0.0910.0000.090
fr1.genscan.LENGTH0.0640.0000.064
fr2.ensGene.LENGTH0.1680.0000.167
galGal2.ensGene.LENGTH0.0920.0000.092
galGal2.geneSymbol.LENGTH0.0240.0000.024
galGal2.geneid.LENGTH0.0470.0000.046
galGal2.genscan.LENGTH0.0560.0000.056
galGal2.refGene.LENGTH0.0170.0000.017
galGal2.sgpGene.LENGTH0.0530.0000.053
galGal3.ensGene.LENGTH0.0850.0000.085
galGal3.geneSymbol.LENGTH0.0170.0000.016
galGal3.genscan.LENGTH0.0520.0000.051
galGal3.nscanGene.LENGTH0.0790.0000.079
galGal3.refGene.LENGTH0.0140.0010.015
galGal3.xenoRefGene.LENGTH0.6040.0020.606
gasAcu1.ensGene.LENGTH0.1150.0000.115
gasAcu1.nscanGene.LENGTH0.1050.0040.109
hg16.acembly.LENGTH0.6380.0000.638
hg16.ensGene.LENGTH0.0950.0000.095
hg16.exoniphy.LENGTH0.2740.0080.282
hg16.geneSymbol.LENGTH0.1390.0000.139
hg16.geneid.LENGTH0.0540.0000.054
hg16.genscan.LENGTH0.0760.0000.076
hg16.knownGene.LENGTH0.140.000.14
hg16.refGene.LENGTH0.1130.0000.113
hg16.sgpGene.LENGTH0.0630.0000.062
hg17.acembly.LENGTH1.1530.0041.157
hg17.acescan.LENGTH0.0070.0040.011
hg17.ccdsGene.LENGTH0.0250.0000.025
hg17.ensGene.LENGTH0.1420.0000.142
hg17.exoniphy.LENGTH0.5040.0000.504
hg17.geneSymbol.LENGTH0.1370.0000.138
hg17.geneid.LENGTH0.0830.0010.084
hg17.genscan.LENGTH0.0720.0030.073
hg17.knownGene.LENGTH0.1200.0000.119
hg17.refGene.LENGTH0.1030.0000.103
hg17.sgpGene.LENGTH0.080.000.08
hg17.vegaGene.LENGTH0.0420.0000.042
hg17.vegaPseudoGene.LENGTH0.0170.0000.017
hg17.xenoRefGene.LENGTH1.1720.0001.172
hg18.acembly.LENGTH0.6260.0001.323
hg18.acescan.LENGTH0.0210.0000.021
hg18.ccdsGene.LENGTH0.0530.0000.054
hg18.ensGene.LENGTH0.2760.0000.276
hg18.exoniphy.LENGTH0.4820.0000.482
hg18.geneSymbol.LENGTH0.1050.0040.108
hg18.geneid.LENGTH0.0770.0000.078
hg18.genscan.LENGTH0.0640.0000.065
hg18.knownGene.LENGTH0.1550.0000.156
hg18.knownGeneOld3.LENGTH0.0690.0000.069
hg18.refGene.LENGTH0.0890.0000.090
hg18.sgpGene.LENGTH0.0760.0000.076
hg18.sibGene.LENGTH0.3460.0000.345
hg18.xenoRefGene.LENGTH0.4360.0000.436
hg19.ccdsGene.LENGTH0.0380.0040.041
hg19.ensGene.LENGTH0.3980.0040.402
hg19.exoniphy.LENGTH0.4530.0000.453
hg19.geneSymbol.LENGTH0.0960.0040.099
hg19.knownGene.LENGTH0.1920.0080.200
hg19.nscanGene.LENGTH0.1570.0040.161
hg19.refGene.LENGTH0.1130.0000.113
hg19.xenoRefGene.LENGTH0.4710.0000.470
loxAfr3.xenoRefGene.LENGTH0.9640.0040.968
mm7.ensGene.LENGTH0.1310.0000.131
mm7.geneSymbol.LENGTH0.0950.0000.096
mm7.geneid.LENGTH0.0790.0000.080
mm7.genscan.LENGTH0.0650.0000.066
mm7.knownGene.LENGTH0.1050.0040.109
mm7.refGene.LENGTH0.0920.0000.092
mm7.sgpGene.LENGTH0.0830.0000.083
mm7.xenoRefGene.LENGTH0.4300.0040.434
mm8.ccdsGene.LENGTH0.0240.0000.024
mm8.ensGene.LENGTH0.0840.0040.087
mm8.geneSymbol.LENGTH0.0940.0000.094
mm8.geneid.LENGTH0.0850.0000.085
mm8.genscan.LENGTH0.3550.0000.354
mm8.knownGene.LENGTH0.1090.0000.108
mm8.nscanGene.LENGTH0.0740.0000.073
mm8.refGene.LENGTH0.0970.0000.097
mm8.sgpGene.LENGTH0.0840.0040.089
mm8.sibGene.LENGTH0.2820.0000.282
mm8.xenoRefGene.LENGTH0.3920.0000.391
mm9.acembly.LENGTH0.3770.0000.377
mm9.ccdsGene.LENGTH0.0320.0000.031
mm9.ensGene.LENGTH0.1720.0000.171
mm9.exoniphy.LENGTH0.4410.0040.445
mm9.geneSymbol.LENGTH0.0980.0000.099
mm9.geneid.LENGTH0.0860.0000.086
mm9.genscan.LENGTH0.0650.0000.065
mm9.knownGene.LENGTH0.1140.0000.113
mm9.nscanGene.LENGTH0.0660.0000.065
mm9.refGene.LENGTH0.0930.0040.097
mm9.sgpGene.LENGTH0.0850.0040.089
mm9.xenoRefGene.LENGTH0.4100.0000.411
monDom1.genscan.LENGTH0.0680.0000.068
monDom4.ensGene.LENGTH0.0810.0000.080
monDom4.geneSymbol.LENGTH0.0040.0000.003
monDom4.genscan.LENGTH0.0570.0000.056
monDom4.nscanGene.LENGTH0.0590.0000.059
monDom4.refGene.LENGTH0.0030.0000.004
monDom4.xenoRefGene.LENGTH0.430.000.43
monDom5.ensGene.LENGTH0.1250.0000.124
monDom5.geneSymbol.LENGTH0.0040.0000.003
monDom5.genscan.LENGTH0.0550.0000.055
monDom5.nscanGene.LENGTH0.1140.0000.114
monDom5.refGene.LENGTH0.0030.0000.004
monDom5.xenoRefGene.LENGTH0.7950.0040.800
ornAna1.ensGene.LENGTH0.1250.0000.125
ornAna1.geneSymbol.LENGTH0.0030.0000.002
ornAna1.refGene.LENGTH0.0000.0020.003
ornAna1.xenoRefGene.LENGTH0.8940.0010.894
oryLat2.ensGene.LENGTH0.1000.0000.101
oryLat2.geneSymbol.LENGTH0.0040.0000.004
oryLat2.refGene.LENGTH0.0050.0000.004
oryLat2.xenoRefGene.LENGTH0.6780.0000.677
panTro1.ensGene.LENGTH0.1120.0000.111
panTro1.geneid.LENGTH0.0560.0000.056
panTro1.genscan.LENGTH0.0680.0040.073
panTro1.xenoRefGene.LENGTH0.1380.0000.138
panTro2.ensGene.LENGTH0.1320.0000.131
panTro2.geneSymbol.LENGTH0.1130.0000.113
panTro2.genscan.LENGTH0.0720.0000.072
panTro2.nscanGene.LENGTH0.0680.0000.068
panTro2.refGene.LENGTH0.1090.0000.108
panTro2.xenoRefGene.LENGTH0.7330.0000.734
petMar1.xenoRefGene.LENGTH0.2990.0000.300
ponAbe2.ensGene.LENGTH0.0890.0000.089
ponAbe2.geneSymbol.LENGTH0.0140.0000.013
ponAbe2.genscan.LENGTH0.0660.0000.065
ponAbe2.nscanGene.LENGTH0.0650.0010.066
ponAbe2.refGene.LENGTH0.0100.0030.012
ponAbe2.xenoRefGene.LENGTH0.7340.0000.733
priPac1.xenoRefGene.LENGTH0.3910.0040.394
rheMac2.ensGene.LENGTH1.1620.0001.162
rheMac2.geneSymbol.LENGTH0.0050.0000.004
rheMac2.geneid.LENGTH0.0720.0000.072
rheMac2.nscanGene.LENGTH0.060.000.06
rheMac2.refGene.LENGTH0.0050.0000.004
rheMac2.sgpGene.LENGTH0.0750.0000.075
rheMac2.xenoRefGene.LENGTH0.5650.0000.566
rn3.ensGene.LENGTH0.110.000.11
rn3.geneSymbol.LENGTH0.0460.0040.050
rn3.geneid.LENGTH0.0540.0000.054
rn3.genscan.LENGTH0.0620.0000.062
rn3.knownGene.LENGTH0.0220.0000.023
rn3.nscanGene.LENGTH0.0590.0000.060
rn3.refGene.LENGTH0.0450.0040.050
rn3.sgpGene.LENGTH0.0570.0000.057
rn3.xenoRefGene.LENGTH0.5820.0000.581
rn4.ensGene.LENGTH0.160.000.16
rn4.geneSymbol.LENGTH0.0520.0000.051
rn4.geneid.LENGTH0.0910.0000.091
rn4.genscan.LENGTH0.0620.0000.063
rn4.knownGene.LENGTH0.0240.0000.025
rn4.nscanGene.LENGTH0.0570.0000.057
rn4.refGene.LENGTH0.060.000.06
rn4.sgpGene.LENGTH0.0910.0000.091
rn4.xenoRefGene.LENGTH0.4090.0000.408
sacCer1.ensGene.LENGTH0.0200.0000.019
sacCer2.ensGene.LENGTH0.0190.0000.019
strPur1.geneSymbol.LENGTH0.0050.0000.005
strPur1.genscan.LENGTH0.0680.0000.068
strPur1.refGene.LENGTH0.0050.0000.004
strPur1.xenoRefGene.LENGTH0.5020.0000.501
strPur2.geneSymbol.LENGTH0.0040.0000.004
strPur2.genscan.LENGTH0.1010.0000.101
strPur2.refGene.LENGTH0.0040.0000.004
strPur2.xenoRefGene.LENGTH0.70.00.7
supportedGeneIDs0.1380.0124.055
supportedGenomes0.2990.0040.829
taeGut1.ensGene.LENGTH0.0830.0000.083
taeGut1.geneSymbol.LENGTH0.0030.0000.003
taeGut1.genscan.LENGTH0.0370.0000.037
taeGut1.nscanGene.LENGTH0.030.000.03
taeGut1.refGene.LENGTH0.0030.0000.004
taeGut1.xenoRefGene.LENGTH0.4680.0000.468
tetNig1.ensGene.LENGTH0.0850.0000.085
tetNig1.geneid.LENGTH0.0660.0000.066
tetNig1.genscan.LENGTH0.0520.0000.052
tetNig1.nscanGene.LENGTH0.0720.0000.072
tetNig2.ensGene.LENGTH0.0640.0040.068
unfactor0.0040.0000.004
xenTro1.genscan.LENGTH0.0840.0000.084
xenTro2.ensGene.LENGTH0.0870.0000.087
xenTro2.geneSymbol.LENGTH0.0280.0040.032
xenTro2.genscan.LENGTH0.0740.0000.074
xenTro2.refGene.LENGTH0.0310.0000.031