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CHECK report for gcspikelite on riesling1

This page was generated on 2021-01-14 15:59:07 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE gcspikelite PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 138/385HostnameOS / ArchINSTALLBUILDCHECK
gcspikelite 1.29.0
Mark Robinson
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/gcspikelite
Branch: master
Last Commit: 2735af6
Last Changed Date: 2020-10-27 09:51:04 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: gcspikelite
Version: 1.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gcspikelite.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings gcspikelite_1.29.0.tar.gz
StartedAt: 2021-01-14 11:20:08 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:20:28 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 19.2 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: gcspikelite.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gcspikelite.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings gcspikelite_1.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/gcspikelite.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gcspikelite/DESCRIPTION' ... OK
* this is package 'gcspikelite' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gcspikelite' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 67.6Mb
  sub-directories of 1Mb or more:
    data  67.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  '0709_468.CDF' '0709_468.ELU' '0709_470.CDF' '0709_470.ELU'
  '0709_471.CDF' '0709_471.ELU' '0709_474.CDF' '0709_474.ELU'
  '0709_475.CDF' '0709_475.ELU' '0709_479.CDF' '0709_479.ELU'
  '0709_485.CDF' '0709_485.ELU' '0709_493.CDF' '0709_493.ELU'
  '0709_496.CDF' '0709_496.ELU' 'chromaTOFex.tof'
Please use e.g. 'inst/extdata' for non-R data files

* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/gcspikelite.Rcheck/00check.log'
for details.



Installation output

gcspikelite.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/gcspikelite_1.29.0.tar.gz && rm -rf gcspikelite.buildbin-libdir && mkdir gcspikelite.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcspikelite.buildbin-libdir gcspikelite_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL gcspikelite_1.29.0.zip && rm gcspikelite_1.29.0.tar.gz gcspikelite_1.29.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 42 23.4M   42  9.8M    0     0  34.5M      0 --:--:-- --:--:-- --:--:-- 34.4M
100 23.4M  100 23.4M    0     0  33.0M      0 --:--:-- --:--:-- --:--:-- 32.9M

install for i386

* installing *source* package 'gcspikelite' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gcspikelite'
    finding HTML links ... done
    targets                                 html  
REDIRECT:topic	 targets -> targets.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'gcspikelite' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gcspikelite' as gcspikelite_1.29.0.zip
* DONE (gcspikelite)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'gcspikelite' successfully unpacked and MD5 sums checked

Tests output


Example timings