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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fabiaData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings fabiaData_1.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/fabiaData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fabiaData/DESCRIPTION' ... OK
* this is package 'fabiaData' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fabiaData' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENCE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'fabiaData/R/zzz.R':
  .onLoad calls:
    packageStartupMessage("Citation: S. Hochreiter et al.,", "\n",     "FABIA: Factor Analysis for Bicluster Acquisition,", "\n",     "Bioinformatics 26(12):1520-1527, 2010.", "\n", "BibTex: enter 'toBibtex(citation(\"fabia\"))'",     "\n\n", "Homepage: http://www.bioinf.jku.at/software/fabia/fabia.html",     "\n\n", "fabiaData Package Version ", version)

See section 'Good practice' in '?.onAttach'.

.onLoad: no visible global function definition for '.find.package'
Undefined global functions or variables:
  .find.package
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/fabiaData.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/fabiaData_1.29.0.tar.gz && rm -rf fabiaData.buildbin-libdir && mkdir fabiaData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fabiaData.buildbin-libdir fabiaData_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL fabiaData_1.29.0.zip && rm fabiaData_1.29.0.tar.gz fabiaData_1.29.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 4411k  100 4411k    0     0  65.2M      0 --:--:-- --:--:-- --:--:-- 66.2M

install for i386

* installing *source* package 'fabiaData' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fabiaData'
    finding HTML links ... done
    Breast_A                                html  
REDIRECT:topic	 Breast_A -> Breast_A.html [ SUCCESS ]
    CBreast                                 html  
REDIRECT:topic	 CBreast -> CBreast.html [ SUCCESS ]
    CDLBCL                                  html  
REDIRECT:topic	 CDLBCL -> CDLBCL.html [ SUCCESS ]
    CMulti                                  html  
REDIRECT:topic	 CMulti -> CMulti.html [ SUCCESS ]
    DLBCL_B                                 html  
REDIRECT:topic	 DLBCL_B -> DLBCL_B.html [ SUCCESS ]
    Multi_A                                 html  
REDIRECT:topic	 Multi_A -> Multi_A.html [ SUCCESS ]
    XBreast                                 html  
REDIRECT:topic	 XBreast -> XBreast.html [ SUCCESS ]
    XDLBCL                                  html  
REDIRECT:topic	 XDLBCL -> XDLBCL.html [ SUCCESS ]
    XMulti                                  html  
REDIRECT:topic	 XMulti -> XMulti.html [ SUCCESS ]
    fabiaData                               html  
REDIRECT:topic	 fabiaData -> fabiaData.html [ SUCCESS ]
    fabiaDataVersion                        html  
REDIRECT:topic	 fabiaDataVersion -> fabiaDataVersion.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fabiaData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fabiaData' as fabiaData_1.29.0.zip
* DONE (fabiaData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'fabiaData' successfully unpacked and MD5 sums checked