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CHECK report for clustifyrdatahub on riesling1

This page was generated on 2021-01-14 15:59:07 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE clustifyrdatahub PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 67/385HostnameOS / ArchINSTALLBUILDCHECK
clustifyrdatahub 1.1.0
Rui Fu
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/clustifyrdatahub
Branch: master
Last Commit: 95cdae9
Last Changed Date: 2020-10-27 10:32:19 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: clustifyrdatahub
Version: 1.1.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:clustifyrdatahub.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings clustifyrdatahub_1.1.0.tar.gz
StartedAt: 2021-01-14 11:11:12 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:13:32 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 140.1 seconds
RetCode: 0
Status:  OK  
CheckDir: clustifyrdatahub.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:clustifyrdatahub.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings clustifyrdatahub_1.1.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/clustifyrdatahub.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clustifyrdatahub/DESCRIPTION' ... OK
* this is package 'clustifyrdatahub' version '1.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'clustifyrdatahub' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

clustifyrdatahub.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/clustifyrdatahub_1.1.0.tar.gz && rm -rf clustifyrdatahub.buildbin-libdir && mkdir clustifyrdatahub.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=clustifyrdatahub.buildbin-libdir clustifyrdatahub_1.1.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL clustifyrdatahub_1.1.0.zip && rm clustifyrdatahub_1.1.0.tar.gz clustifyrdatahub_1.1.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 11461  100 11461    0     0  48155      0 --:--:-- --:--:-- --:--:-- 48155

install for i386

* installing *source* package 'clustifyrdatahub' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'clustifyrdatahub'
    finding HTML links ... done
    clustifyrdatahub                        html  
REDIRECT:topic	 clustifyrdatahub -> clustifyrdatahub.html [ SUCCESS ]
    ref_MCA                                 html  
REDIRECT:topic	 ref_MCA -> ref_MCA.html [ SUCCESS ]
    ref_cortex_dev                          html  
REDIRECT:topic	 ref_cortex_dev -> ref_cortex_dev.html [ SUCCESS ]
    ref_hema_microarray                     html  
REDIRECT:topic	 ref_hema_microarray -> ref_hema_microarray.html [ SUCCESS ]
    ref_immgen                              html  
REDIRECT:topic	 ref_immgen -> ref_immgen.html [ SUCCESS ]
    ref_moca_main                           html  
REDIRECT:topic	 ref_moca_main -> ref_moca_main.html [ SUCCESS ]
    ref_mouse.rnaseq                        html  
REDIRECT:topic	 ref_mouse.rnaseq -> ref_mouse.rnaseq.html [ SUCCESS ]
    ref_mouse_atlas                         html  
REDIRECT:topic	 ref_mouse_atlas -> ref_mouse_atlas.html [ SUCCESS ]
    ref_pan_indrop                          html  
REDIRECT:topic	 ref_pan_indrop -> ref_pan_indrop.html [ SUCCESS ]
    ref_pan_smartseq2                       html  
REDIRECT:topic	 ref_pan_smartseq2 -> ref_pan_smartseq2.html [ SUCCESS ]
    ref_tabula_muris_drop                   html  
REDIRECT:topic	 ref_tabula_muris_drop -> ref_tabula_muris_drop.html [ SUCCESS ]
    ref_tabula_muris_facs                   html  
REDIRECT:topic	 ref_tabula_muris_facs -> ref_tabula_muris_facs.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2021-01-14
** testing if installed package can be loaded from final location
snapshotDate(): 2021-01-14
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'clustifyrdatahub' ...
** testing if installed package can be loaded
snapshotDate(): 2021-01-14
* MD5 sums
packaged installation of 'clustifyrdatahub' as clustifyrdatahub_1.1.0.zip
* DONE (clustifyrdatahub)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'clustifyrdatahub' successfully unpacked and MD5 sums checked

Tests output


Example timings

clustifyrdatahub.Rcheck/examples_i386/clustifyrdatahub-Ex.timings

nameusersystemelapsed
ref_MCA0.670.040.86
ref_cortex_dev0.640.060.85
ref_hema_microarray0.690.060.88
ref_immgen0.690.030.87
ref_moca_main0.680.060.88
ref_mouse.rnaseq0.720.020.89
ref_mouse_atlas0.700.020.84
ref_pan_indrop0.680.060.87
ref_pan_smartseq20.620.110.87
ref_tabula_muris_drop0.700.050.89
ref_tabula_muris_facs0.630.060.86

clustifyrdatahub.Rcheck/examples_x64/clustifyrdatahub-Ex.timings

nameusersystemelapsed
ref_MCA0.750.040.92
ref_cortex_dev0.720.030.92
ref_hema_microarray0.720.050.90
ref_immgen0.690.050.91
ref_moca_main0.690.040.89
ref_mouse.rnaseq0.680.070.93
ref_mouse_atlas0.720.030.89
ref_pan_indrop0.670.060.89
ref_pan_smartseq20.690.060.94
ref_tabula_muris_drop0.720.030.89
ref_tabula_muris_facs0.690.070.91