Back to Multiple platform build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-01-21 16:01:26 -0500 (Thu, 21 Jan 2021).
TO THE DEVELOPERS/MAINTAINERS OF THE chipenrich.data PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 59/386 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
chipenrich.data 2.15.0 Raymond G. Cavalcante
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | |||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] |
Package: chipenrich.data |
Version: 2.15.0 |
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:chipenrich.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings chipenrich.data_2.15.0.tar.gz |
StartedAt: 2021-01-21 11:15:14 -0500 (Thu, 21 Jan 2021) |
EndedAt: 2021-01-21 11:19:27 -0500 (Thu, 21 Jan 2021) |
EllapsedTime: 252.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: chipenrich.data.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:chipenrich.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings chipenrich.data_2.15.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/chipenrich.data.Rcheck' * using R Under development (unstable) (2020-12-30 r79736) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'chipenrich.data/DESCRIPTION' ... OK * this is package 'chipenrich.data' version '2.15.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'chipenrich.data' can be installed ... OK * checking installed package size ... NOTE installed size is 161.5Mb sub-directories of 1Mb or more: data 159.2Mb html 1.2Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.13-data-experiment/meat/chipenrich.data.Rcheck/00check.log' for details.
chipenrich.data.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/chipenrich.data_2.15.0.tar.gz && rm -rf chipenrich.data.buildbin-libdir && mkdir chipenrich.data.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipenrich.data.buildbin-libdir chipenrich.data_2.15.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL chipenrich.data_2.15.0.zip && rm chipenrich.data_2.15.0.tar.gz chipenrich.data_2.15.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 33 236M 33 79.2M 0 0 81.9M 0 0:00:02 --:--:-- 0:00:02 81.8M 78 236M 78 187M 0 0 95.7M 0 0:00:02 0:00:01 0:00:01 95.7M 100 236M 100 236M 0 0 94.7M 0 0:00:02 0:00:02 --:--:-- 94.7M install for i386 * installing *source* package 'chipenrich.data' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'chipenrich.data' finding HTML links ... done GeneSet-class html REDIRECT:topic GeneSet-class -> GeneSet-class.html [ SUCCESS ] LocusDefinition-class html REDIRECT:topic LocusDefinition-class -> LocusDefinition-class.html [ SUCCESS ] chipenrich.data html REDIRECT:topic chipenrich.data -> chipenrich.data.html [ SUCCESS ] REDIRECT:topic chipenrich.data-package -> chipenrich.data.html [ SUCCESS ] enhancer.dnase_thurman.0 html REDIRECT:topic enhancer.dnase_thurman.0 -> enhancer.dnase_thurman.0.html [ SUCCESS ] gene.enh.desc html REDIRECT:topic gene.enh.desc 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html REDIRECT:topic mappa.hg19.5kb.100mer -> mappa.hg19.5kb.100mer.html [ SUCCESS ] mappa.hg19.5kb.24mer html REDIRECT:topic mappa.hg19.5kb.24mer -> mappa.hg19.5kb.24mer.html [ SUCCESS ] mappa.hg19.5kb.36mer html REDIRECT:topic mappa.hg19.5kb.36mer -> mappa.hg19.5kb.36mer.html [ SUCCESS ] mappa.hg19.5kb.40mer html REDIRECT:topic mappa.hg19.5kb.40mer -> mappa.hg19.5kb.40mer.html [ SUCCESS ] mappa.hg19.5kb.50mer html REDIRECT:topic mappa.hg19.5kb.50mer -> mappa.hg19.5kb.50mer.html [ SUCCESS ] mappa.hg19.5kb.75mer html REDIRECT:topic mappa.hg19.5kb.75mer -> mappa.hg19.5kb.75mer.html [ SUCCESS ] mappa.hg19.exon.100mer html REDIRECT:topic mappa.hg19.exon.100mer -> mappa.hg19.exon.100mer.html [ SUCCESS ] mappa.hg19.exon.24mer html REDIRECT:topic mappa.hg19.exon.24mer -> mappa.hg19.exon.24mer.html [ SUCCESS ] mappa.hg19.exon.36mer html REDIRECT:topic mappa.hg19.exon.36mer -> mappa.hg19.exon.36mer.html [ SUCCESS ] mappa.hg19.exon.40mer html REDIRECT:topic mappa.hg19.exon.40mer -> 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mappa.mm9.nearest_tss.36mer.html [ SUCCESS ] mappa.mm9.nearest_tss.40mer html REDIRECT:topic mappa.mm9.nearest_tss.40mer -> mappa.mm9.nearest_tss.40mer.html [ SUCCESS ] mappa.mm9.nearest_tss.50mer html REDIRECT:topic mappa.mm9.nearest_tss.50mer -> mappa.mm9.nearest_tss.50mer.html [ SUCCESS ] mappa.mm9.nearest_tss.75mer html REDIRECT:topic mappa.mm9.nearest_tss.75mer -> mappa.mm9.nearest_tss.75mer.html [ SUCCESS ] peaks_E2F4 html REDIRECT:topic peaks_E2F4 -> peaks_E2F4.html [ SUCCESS ] peaks_H3K4me3_GM12878 html REDIRECT:topic peaks_H3K4me3_GM12878 -> peaks_H3K4me3_GM12878.html [ SUCCESS ] spline.log_dtss.90ENCODE html REDIRECT:topic spline.log_dtss.90ENCODE -> spline.log_dtss.90ENCODE.html [ SUCCESS ] tss.danRer10 html REDIRECT:topic tss.danRer10 -> tss.danRer10.html [ SUCCESS ] tss.dm3 html REDIRECT:topic tss.dm3 -> tss.dm3.html [ SUCCESS ] tss.dm6 html REDIRECT:topic tss.dm6 -> tss.dm6.html [ SUCCESS ] tss.hg19 html REDIRECT:topic tss.hg19 -> tss.hg19.html [ SUCCESS ] tss.hg38 html REDIRECT:topic tss.hg38 -> tss.hg38.html [ SUCCESS ] tss.mm10 html REDIRECT:topic tss.mm10 -> tss.mm10.html [ SUCCESS ] tss.mm9 html REDIRECT:topic tss.mm9 -> tss.mm9.html [ SUCCESS ] tss.rn4 html REDIRECT:topic tss.rn4 -> tss.rn4.html [ SUCCESS ] tss.rn5 html REDIRECT:topic tss.rn5 -> tss.rn5.html [ SUCCESS ] tss.rn6 html REDIRECT:topic tss.rn6 -> tss.rn6.html [ SUCCESS ] ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'chipenrich.data' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'chipenrich.data' as chipenrich.data_2.15.0.zip * DONE (chipenrich.data) * installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library' package 'chipenrich.data' successfully unpacked and MD5 sums checked
chipenrich.data.Rcheck/examples_i386/chipenrich.data-Ex.timings
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chipenrich.data.Rcheck/examples_x64/chipenrich.data-Ex.timings
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