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CHECK report for ccdata on riesling1

This page was generated on 2021-01-14 15:59:06 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE ccdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 46/385HostnameOS / ArchINSTALLBUILDCHECK
ccdata 1.17.0
Alex Pickering
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/ccdata
Branch: master
Last Commit: 7f6a164
Last Changed Date: 2020-10-27 10:21:01 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: ccdata
Version: 1.17.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ccdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ccdata_1.17.0.tar.gz
StartedAt: 2021-01-14 11:09:02 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:11:39 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 156.5 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: ccdata.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ccdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ccdata_1.17.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/ccdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ccdata/DESCRIPTION' ... OK
* this is package 'ccdata' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ccdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 893.9Mb
  sub-directories of 1Mb or more:
    data  893.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
man/cmap_es.Rd: non-ASCII input and no declared encoding
man/cmap_var.Rd: non-ASCII input and no declared encoding
man/l1000_es.Rd: non-ASCII input and no declared encoding
problems found in 'cmap_es.Rd', 'cmap_var.Rd', 'l1000_es.Rd'
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/ccdata.Rcheck/00check.log'
for details.



Installation output

ccdata.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/ccdata_1.17.0.tar.gz && rm -rf ccdata.buildbin-libdir && mkdir ccdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ccdata.buildbin-libdir ccdata_1.17.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ccdata_1.17.0.zip && rm ccdata_1.17.0.tar.gz ccdata_1.17.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  4  893M    4 36.4M    0     0  34.8M      0  0:00:25  0:00:01  0:00:24 34.8M
 13  893M   13  119M    0     0  60.9M      0  0:00:14  0:00:01  0:00:13 60.9M
 17  893M   17  160M    0     0  53.4M      0  0:00:16  0:00:03  0:00:13 53.4M
 27  893M   27  242M    0     0  61.1M      0  0:00:14  0:00:03  0:00:11 61.1M
 39  893M   39  351M    0     0  70.8M      0  0:00:12  0:00:04  0:00:08 70.8M
 50  893M   50  447M    0     0  74.9M      0  0:00:11  0:00:05  0:00:06 83.5M
 55  893M   55  493M    0     0  70.8M      0  0:00:12  0:00:06  0:00:06 74.6M
 67  893M   67  601M    0     0  75.4M      0  0:00:11  0:00:07  0:00:04 88.8M
 77  893M   77  696M    0     0  77.7M      0  0:00:11  0:00:08  0:00:03 90.8M
 85  893M   85  765M    0     0  76.8M      0  0:00:11  0:00:09  0:00:02 82.7M
 95  893M   95  851M    0     0  77.6M      0  0:00:11  0:00:10  0:00:01 80.9M
100  893M  100  893M    0     0  78.3M      0  0:00:11  0:00:11 --:--:-- 90.1M

install for i386

* installing *source* package 'ccdata' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ccdata'
    finding HTML links ... done
    cmap_es                                 html  
REDIRECT:topic	 cmap_es -> cmap_es.html [ SUCCESS ]
    cmap_var                                html  
REDIRECT:topic	 cmap_var -> cmap_var.html [ SUCCESS ]
    genes                                   html  
REDIRECT:topic	 genes -> genes.html [ SUCCESS ]
    l1000_es                                html  
REDIRECT:topic	 l1000_es -> l1000_es.html [ SUCCESS ]
    net1                                    html  
REDIRECT:topic	 net1 -> net1.html [ SUCCESS ]
    net2                                    html  
REDIRECT:topic	 net2 -> net2.html [ SUCCESS ]
    xgb_mod                                 html  
REDIRECT:topic	 xgb_mod -> xgb_mod.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ccdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ccdata' as ccdata_1.17.0.zip
* DONE (ccdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'ccdata' successfully unpacked and MD5 sums checked

Tests output


Example timings