Alex Pickering
| Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021) |
| URL: https://git.bioconductor.org/packages/ccdata |
| Branch: master |
| Last Commit: 7f6a164 |
| Last Changed Date: 2020-10-27 10:21:01 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-14 15:59:06 -0500 (Thu, 14 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE ccdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 46/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| ccdata 1.17.0 Alex Pickering
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ WARNINGS ] |
| Package: ccdata |
| Version: 1.17.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ccdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ccdata_1.17.0.tar.gz |
| StartedAt: 2021-01-14 11:09:02 -0500 (Thu, 14 Jan 2021) |
| EndedAt: 2021-01-14 11:11:39 -0500 (Thu, 14 Jan 2021) |
| EllapsedTime: 156.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ccdata.Rcheck |
| Warnings: 1 |
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### Running command:
###
### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ccdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ccdata_1.17.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/ccdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ccdata/DESCRIPTION' ... OK
* this is package 'ccdata' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ccdata' can be installed ... OK
* checking installed package size ... NOTE
installed size is 893.9Mb
sub-directories of 1Mb or more:
data 893.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
man/cmap_es.Rd: non-ASCII input and no declared encoding
man/cmap_var.Rd: non-ASCII input and no declared encoding
man/l1000_es.Rd: non-ASCII input and no declared encoding
problems found in 'cmap_es.Rd', 'cmap_var.Rd', 'l1000_es.Rd'
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/ccdata.Rcheck/00check.log'
for details.
ccdata.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/ccdata_1.17.0.tar.gz && rm -rf ccdata.buildbin-libdir && mkdir ccdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ccdata.buildbin-libdir ccdata_1.17.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ccdata_1.17.0.zip && rm ccdata_1.17.0.tar.gz ccdata_1.17.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
4 893M 4 36.4M 0 0 34.8M 0 0:00:25 0:00:01 0:00:24 34.8M
13 893M 13 119M 0 0 60.9M 0 0:00:14 0:00:01 0:00:13 60.9M
17 893M 17 160M 0 0 53.4M 0 0:00:16 0:00:03 0:00:13 53.4M
27 893M 27 242M 0 0 61.1M 0 0:00:14 0:00:03 0:00:11 61.1M
39 893M 39 351M 0 0 70.8M 0 0:00:12 0:00:04 0:00:08 70.8M
50 893M 50 447M 0 0 74.9M 0 0:00:11 0:00:05 0:00:06 83.5M
55 893M 55 493M 0 0 70.8M 0 0:00:12 0:00:06 0:00:06 74.6M
67 893M 67 601M 0 0 75.4M 0 0:00:11 0:00:07 0:00:04 88.8M
77 893M 77 696M 0 0 77.7M 0 0:00:11 0:00:08 0:00:03 90.8M
85 893M 85 765M 0 0 76.8M 0 0:00:11 0:00:09 0:00:02 82.7M
95 893M 95 851M 0 0 77.6M 0 0:00:11 0:00:10 0:00:01 80.9M
100 893M 100 893M 0 0 78.3M 0 0:00:11 0:00:11 --:--:-- 90.1M
install for i386
* installing *source* package 'ccdata' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ccdata'
finding HTML links ... done
cmap_es html
REDIRECT:topic cmap_es -> cmap_es.html [ SUCCESS ]
cmap_var html
REDIRECT:topic cmap_var -> cmap_var.html [ SUCCESS ]
genes html
REDIRECT:topic genes -> genes.html [ SUCCESS ]
l1000_es html
REDIRECT:topic l1000_es -> l1000_es.html [ SUCCESS ]
net1 html
REDIRECT:topic net1 -> net1.html [ SUCCESS ]
net2 html
REDIRECT:topic net2 -> net2.html [ SUCCESS ]
xgb_mod html
REDIRECT:topic xgb_mod -> xgb_mod.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ccdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ccdata' as ccdata_1.17.0.zip
* DONE (ccdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'ccdata' successfully unpacked and MD5 sums checked