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CHECK report for bsseqData on riesling1

This page was generated on 2021-01-21 16:01:25 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE bsseqData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 43/386HostnameOS / ArchINSTALLBUILDCHECK
bsseqData 0.29.0
Kasper Daniel Hansen
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/bsseqData
Branch: master
Last Commit: 05f855c
Last Changed Date: 2020-10-27 09:56:15 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: bsseqData
Version: 0.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:bsseqData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings bsseqData_0.29.0.tar.gz
StartedAt: 2021-01-21 11:13:35 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:15:58 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 143.5 seconds
RetCode: 0
Status:  OK  
CheckDir: bsseqData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:bsseqData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings bsseqData_0.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/bsseqData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bsseqData/DESCRIPTION' ... OK
* this is package 'bsseqData' version '0.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bsseqData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 200.9Mb
  sub-directories of 1Mb or more:
    data   140.0Mb
    umtab   60.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/bsseqData.Rcheck/00check.log'
for details.



Installation output

bsseqData.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/bsseqData_0.29.0.tar.gz && rm -rf bsseqData.buildbin-libdir && mkdir bsseqData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bsseqData.buildbin-libdir bsseqData_0.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL bsseqData_0.29.0.zip && rm bsseqData_0.29.0.tar.gz bsseqData_0.29.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 20  128M   20 25.9M    0     0  95.2M      0  0:00:01 --:--:--  0:00:01 94.8M
100  128M  100  128M    0     0   109M      0  0:00:01  0:00:01 --:--:--  109M

install for i386

* installing *source* package 'bsseqData' ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
  converting help for package 'bsseqData'
    finding HTML links ... done
    BS.cancer.ex                            html  
REDIRECT:topic	 BS.cancer.ex -> BS.cancer.ex.html [ SUCCESS ]
    BS.cancer.ex.fit                        html  
REDIRECT:topic	 BS.cancer.ex.fit -> BS.cancer.ex.fit.html [ SUCCESS ]
    BS.cancer.ex.tstat                      html  
REDIRECT:topic	 BS.cancer.ex.tstat -> BS.cancer.ex.tstat.html [ SUCCESS ]
    keepLoci.ex                             html  
REDIRECT:topic	 keepLoci.ex -> keepLoci.ex.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bsseqData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bsseqData' as bsseqData_0.29.0.zip
* DONE (bsseqData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'bsseqData' successfully unpacked and MD5 sums checked

Tests output


Example timings

bsseqData.Rcheck/examples_i386/bsseqData-Ex.timings

nameusersystemelapsed
BS.cancer.ex2.130.112.23
BS.cancer.ex.fit2.200.212.41
BS.cancer.ex.tstat0.180.030.22
keepLoci.ex0.020.000.02

bsseqData.Rcheck/examples_x64/bsseqData-Ex.timings

nameusersystemelapsed
BS.cancer.ex1.920.082.00
BS.cancer.ex.fit2.340.232.58
BS.cancer.ex.tstat0.190.020.21
keepLoci.ex0.000.020.01