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CHECK report for breastCancerVDX on riesling1

This page was generated on 2021-01-21 16:01:25 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE breastCancerVDX PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 40/386HostnameOS / ArchINSTALLBUILDCHECK
breastCancerVDX 1.29.0
Markus Schroeder , Benjamin Haibe-Kains
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/breastCancerVDX
Branch: master
Last Commit: ea547c4
Last Changed Date: 2020-10-27 09:52:57 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: breastCancerVDX
Version: 1.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:breastCancerVDX.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings breastCancerVDX_1.29.0.tar.gz
StartedAt: 2021-01-21 11:13:09 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:14:18 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 69.4 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: breastCancerVDX.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:breastCancerVDX.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings breastCancerVDX_1.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/breastCancerVDX.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'breastCancerVDX/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'breastCancerVDX' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'breastCancerVDX' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 39.6Mb
  sub-directories of 1Mb or more:
    data  39.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
          old_size new_size compress
  vdx.rda   39.5Mb   16.9Mb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/breastCancerVDX.Rcheck/00check.log'
for details.



Installation output

breastCancerVDX.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/breastCancerVDX_1.29.0.tar.gz && rm -rf breastCancerVDX.buildbin-libdir && mkdir breastCancerVDX.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=breastCancerVDX.buildbin-libdir breastCancerVDX_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL breastCancerVDX_1.29.0.zip && rm breastCancerVDX_1.29.0.tar.gz breastCancerVDX_1.29.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 74 39.5M   74 29.4M    0     0  45.9M      0 --:--:-- --:--:-- --:--:-- 45.8M
100 39.5M  100 39.5M    0     0  46.7M      0 --:--:-- --:--:-- --:--:-- 46.7M

install for i386

* installing *source* package 'breastCancerVDX' ...
** using staged installation
** data
** help
*** installing help indices
  converting help for package 'breastCancerVDX'
    finding HTML links ... done
    vdx                                     html  
REDIRECT:topic	 vdx -> vdx.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'breastCancerVDX' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'breastCancerVDX' as breastCancerVDX_1.29.0.zip
* DONE (breastCancerVDX)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'breastCancerVDX' successfully unpacked and MD5 sums checked

Tests output


Example timings

breastCancerVDX.Rcheck/examples_i386/breastCancerVDX-Ex.timings

nameusersystemelapsed
vdx0.970.051.02

breastCancerVDX.Rcheck/examples_x64/breastCancerVDX-Ex.timings

nameusersystemelapsed
vdx0.910.050.95