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CHECK report for breastCancerNKI on riesling1

This page was generated on 2021-01-21 16:01:25 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE breastCancerNKI PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 36/386HostnameOS / ArchINSTALLBUILDCHECK
breastCancerNKI 1.29.0
Markus Schroeder , Benjamin Haibe-Kains
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/breastCancerNKI
Branch: master
Last Commit: 8a22703
Last Changed Date: 2020-10-27 09:52:43 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: breastCancerNKI
Version: 1.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:breastCancerNKI.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings breastCancerNKI_1.29.0.tar.gz
StartedAt: 2021-01-21 11:12:47 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:14:06 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 79.4 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: breastCancerNKI.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:breastCancerNKI.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings breastCancerNKI_1.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/breastCancerNKI.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'breastCancerNKI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'breastCancerNKI' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'breastCancerNKI' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 16.0Mb
  sub-directories of 1Mb or more:
    data  15.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
          old_size new_size compress
  nki.rda   15.9Mb   10.8Mb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/breastCancerNKI.Rcheck/00check.log'
for details.



Installation output

breastCancerNKI.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/breastCancerNKI_1.29.0.tar.gz && rm -rf breastCancerNKI.buildbin-libdir && mkdir breastCancerNKI.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=breastCancerNKI.buildbin-libdir breastCancerNKI_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL breastCancerNKI_1.29.0.zip && rm breastCancerNKI_1.29.0.tar.gz breastCancerNKI_1.29.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  5 15.5M    5  806k    0     0   715k      0  0:00:22  0:00:01  0:00:21  715k
 14 15.5M   14 2316k    0     0  1214k      0  0:00:13  0:00:01  0:00:12 1214k
 22 15.5M   22 3542k    0     0  1204k      0  0:00:13  0:00:02  0:00:11 1203k
 57 15.5M   57 9174k    0     0  2196k      0  0:00:07  0:00:04  0:00:03 2196k
 67 15.5M   67 10.4M    0     0  2173k      0  0:00:07  0:00:04  0:00:03 2172k
100 15.5M  100 15.5M    0     0  2898k      0  0:00:05  0:00:05 --:--:-- 3463k

install for i386

* installing *source* package 'breastCancerNKI' ...
** using staged installation
** data
** help
*** installing help indices
  converting help for package 'breastCancerNKI'
    finding HTML links ... done
    nki                                     html  
REDIRECT:topic	 nki -> nki.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'breastCancerNKI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'breastCancerNKI' as breastCancerNKI_1.29.0.zip
* DONE (breastCancerNKI)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'breastCancerNKI' successfully unpacked and MD5 sums checked

Tests output


Example timings

breastCancerNKI.Rcheck/examples_i386/breastCancerNKI-Ex.timings

nameusersystemelapsed
nki0.670.030.71

breastCancerNKI.Rcheck/examples_x64/breastCancerNKI-Ex.timings

nameusersystemelapsed
nki0.630.030.65