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CHECK report for beta7 on riesling1

This page was generated on 2021-01-21 16:01:24 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE beta7 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 26/386HostnameOS / ArchINSTALLBUILDCHECK
beta7 1.29.0
Jean Yang
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/beta7
Branch: master
Last Commit: 219d575
Last Changed Date: 2020-10-27 09:44:50 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: beta7
Version: 1.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:beta7.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings beta7_1.29.0.tar.gz
StartedAt: 2021-01-21 11:12:19 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:12:44 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 25.1 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: beta7.Rcheck
Warnings: 2

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:beta7.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings beta7_1.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/beta7.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'beta7/DESCRIPTION' ... OK
* this is package 'beta7' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'beta7' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 37.3Mb
  sub-directories of 1Mb or more:
    beta7  35.7Mb
    data    1.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  'Rdata.rdb' 'Rdata.rds' 'Rdata.rdx'
Please use e.g. 'inst/extdata' for non-R data files

* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/beta7.Rcheck/00check.log'
for details.



Installation output

beta7.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/beta7_1.29.0.tar.gz && rm -rf beta7.buildbin-libdir && mkdir beta7.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=beta7.buildbin-libdir beta7_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL beta7_1.29.0.zip && rm beta7_1.29.0.tar.gz beta7_1.29.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 15.2M  100 15.2M    0     0  92.1M      0 --:--:-- --:--:-- --:--:-- 92.1M

install for i386

* installing *source* package 'beta7' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'beta7'
    finding HTML links ... done
    beta7                                   html  
REDIRECT:topic	 beta7 -> beta7.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'beta7' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'beta7' as beta7_1.29.0.zip
* DONE (beta7)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'beta7' successfully unpacked and MD5 sums checked

Tests output


Example timings

beta7.Rcheck/examples_i386/beta7-Ex.timings

nameusersystemelapsed
beta70.140.060.21

beta7.Rcheck/examples_x64/beta7-Ex.timings

nameusersystemelapsed
beta70.170.020.19