Back to Multiple platform build/check report for BioC 3.13 experimental data
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

CHECK report for benchmarkfdrData2019 on riesling1

This page was generated on 2021-01-14 15:59:06 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE benchmarkfdrData2019 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 25/385HostnameOS / ArchINSTALLBUILDCHECK
benchmarkfdrData2019 1.5.0
Stephanie Hicks
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/benchmarkfdrData2019
Branch: master
Last Commit: 259eb05
Last Changed Date: 2020-10-27 10:30:09 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: benchmarkfdrData2019
Version: 1.5.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:benchmarkfdrData2019.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings benchmarkfdrData2019_1.5.0.tar.gz
StartedAt: 2021-01-14 11:07:29 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:12:30 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 301.5 seconds
RetCode: 0
Status:  OK  
CheckDir: benchmarkfdrData2019.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:benchmarkfdrData2019.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings benchmarkfdrData2019_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/benchmarkfdrData2019.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'benchmarkfdrData2019/DESCRIPTION' ... OK
* this is package 'benchmarkfdrData2019' version '1.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  benchmarkfdrData2019/inst/scripts/make-data/Simulations/simulations-varyinginformativeness-discrete.Rmd
  benchmarkfdrData2019/inst/scripts/make-data/Simulations/simulations-varyinginformativeness-smooth.Rmd
  benchmarkfdrData2019/inst/scripts/make-data/YeastInSilico/yeast-simulation-bimodalalternative-highpi0.Rmd

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'benchmarkfdrData2019' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'SummarizedExperiment'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/benchmarkfdrData2019.Rcheck/00check.log'
for details.



Installation output

benchmarkfdrData2019.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/benchmarkfdrData2019_1.5.0.tar.gz && rm -rf benchmarkfdrData2019.buildbin-libdir && mkdir benchmarkfdrData2019.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=benchmarkfdrData2019.buildbin-libdir benchmarkfdrData2019_1.5.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL benchmarkfdrData2019_1.5.0.zip && rm benchmarkfdrData2019_1.5.0.tar.gz benchmarkfdrData2019_1.5.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  147k  100  147k    0     0  7744k      0 --:--:-- --:--:-- --:--:-- 7744k

install for i386

* installing *source* package 'benchmarkfdrData2019' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'benchmarkfdrData2019'
    finding HTML links ... done
    chipseq-cbp                             html  
REDIRECT:topic	 chipseq-cbp -> chipseq-cbp.html [ SUCCESS ]
REDIRECT:topic	 cbp-csaw-benchmark -> chipseq-cbp.html [ SUCCESS ]
REDIRECT:topic	 cbp-csaw-uninf-benchmark -> chipseq-cbp.html [ SUCCESS ]
REDIRECT:topic	 cbp-csaw-cov-benchmark -> chipseq-cbp.html [ SUCCESS ]
    chipseq-h3k4me3                         html  
REDIRECT:topic	 chipseq-h3k4me3 -> chipseq-h3k4me3.html [ SUCCESS ]
REDIRECT:topic	 h3k4me3-promoters-benchmark -> chipseq-h3k4me3.html [ SUCCESS ]
REDIRECT:topic	 h3k4me3-csaw-benchmark -> chipseq-h3k4me3.html [ SUCCESS ]
REDIRECT:topic	 h3k4me3-csaw-uninf-benchmark -> chipseq-h3k4me3.html [ SUCCESS ]
REDIRECT:topic	 h3k4me3-csaw-cov-benchmark -> chipseq-h3k4me3.html [ SUCCESS ]
    gsa-human                               html  
REDIRECT:topic	 gsa-human -> gsa-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark -> gsa-human.html [ SUCCESS ]
REDIRECT:topic	 human-uninf-benchmark -> gsa-human.html [ SUCCESS ]
    gsa-mouse                               html  
REDIRECT:topic	 gsa-mouse -> gsa-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark -> gsa-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-uninf-benchmark -> gsa-mouse.html [ SUCCESS ]
    gwas-bmi                                html  
REDIRECT:topic	 gwas-bmi -> gwas-bmi.html [ SUCCESS ]
REDIRECT:topic	 bmi-maf-benchmark -> gwas-bmi.html [ SUCCESS ]
REDIRECT:topic	 bmi-uninf-benchmark -> gwas-bmi.html [ SUCCESS ]
REDIRECT:topic	 bmi-samplesize-benchmark -> gwas-bmi.html [ SUCCESS ]
    microbiome-baxter                       html  
REDIRECT:topic	 microbiome-baxter -> microbiome-baxter.html [ SUCCESS ]
REDIRECT:topic	 baxter-genus-benchmark -> microbiome-baxter.html [ SUCCESS ]
REDIRECT:topic	 baxter-genus-log-ubiquity-benchmark -> microbiome-baxter.html [ SUCCESS ]
REDIRECT:topic	 baxter-genus-mean-abun-benchmark -> microbiome-baxter.html [ SUCCESS ]
REDIRECT:topic	 baxter-genus-mean-uninf-benchmark -> microbiome-baxter.html [ SUCCESS ]
REDIRECT:topic	 baxter-otus-benchmark -> microbiome-baxter.html [ SUCCESS ]
REDIRECT:topic	 baxter-otus-log-ubiquity-benchmark -> microbiome-baxter.html [ SUCCESS ]
    microbiome-enigma                       html  
REDIRECT:topic	 microbiome-enigma -> microbiome-enigma.html [ SUCCESS ]
REDIRECT:topic	 enigma-al-otus-benchmark -> microbiome-enigma.html [ SUCCESS ]
REDIRECT:topic	 enigma-al-otus-abun-benchmark -> microbiome-enigma.html [ SUCCESS ]
REDIRECT:topic	 enigma-al-otus-uninf-benchmark -> microbiome-enigma.html [ SUCCESS ]
REDIRECT:topic	 enigma-ph-otus-benchmark -> microbiome-enigma.html [ SUCCESS ]
REDIRECT:topic	 enigma-ph-otus-abun-benchmark -> microbiome-enigma.html [ SUCCESS ]
REDIRECT:topic	 enigma-ph-otus-uninf-benchmark -> microbiome-enigma.html [ SUCCESS ]
REDIRECT:topic	 enigma-so4-otus-benchmark -> microbiome-enigma.html [ SUCCESS ]
REDIRECT:topic	 enigma-so4-otus-abun-benchmark -> microbiome-enigma.html [ SUCCESS ]
REDIRECT:topic	 enigma-so4-otus-uninf-benchmark -> microbiome-enigma.html [ SUCCESS ]
    microbiome-goodrich                     html  
REDIRECT:topic	 microbiome-goodrich -> microbiome-goodrich.html [ SUCCESS ]
REDIRECT:topic	 goodrich-genus-benchmark -> microbiome-goodrich.html [ SUCCESS ]
REDIRECT:topic	 goodrich-genus-abun-benchmark -> microbiome-goodrich.html [ SUCCESS ]
REDIRECT:topic	 goodrich-genus-uninf-benchmark -> microbiome-goodrich.html [ SUCCESS ]
REDIRECT:topic	 goodrich-otus-benchmark -> microbiome-goodrich.html [ SUCCESS ]
    microbiome-papa                         html  
REDIRECT:topic	 microbiome-papa -> microbiome-papa.html [ SUCCESS ]
REDIRECT:topic	 papa-genus-benchmark -> microbiome-papa.html [ SUCCESS ]
REDIRECT:topic	 papa-genus-abun-benchmark -> microbiome-papa.html [ SUCCESS ]
REDIRECT:topic	 papa-genus-log-ubiquity-benchmark -> microbiome-papa.html [ SUCCESS ]
REDIRECT:topic	 papa-genus-uninf-benchmark -> microbiome-papa.html [ SUCCESS ]
REDIRECT:topic	 papa-otus-benchmark -> microbiome-papa.html [ SUCCESS ]
    microbiome-schubert                     html  
REDIRECT:topic	 microbiome-schubert -> microbiome-schubert.html [ SUCCESS ]
REDIRECT:topic	 schubert-otus-benchmark -> microbiome-schubert.html [ SUCCESS ]
REDIRECT:topic	 schubert-otus-abun-benchmark -> microbiome-schubert.html [ SUCCESS ]
REDIRECT:topic	 schubert-otus-uninf-benchmark -> microbiome-schubert.html [ SUCCESS ]
    polyester-insilico                      html  
REDIRECT:topic	 polyester-insilico -> polyester-insilico.html [ SUCCESS ]
REDIRECT:topic	 polyester-results-de5 -> polyester-insilico.html [ SUCCESS ]
REDIRECT:topic	 polyester-results-de5-uninfCov -> polyester-insilico.html [ SUCCESS ]
REDIRECT:topic	 polyester-results-de10 -> polyester-insilico.html [ SUCCESS ]
REDIRECT:topic	 polyester-results-de10-uninfCov -> polyester-insilico.html [ SUCCESS ]
REDIRECT:topic	 polyester-results-null5 -> polyester-insilico.html [ SUCCESS ]
REDIRECT:topic	 polyester-results-null10 -> polyester-insilico.html [ SUCCESS ]
REDIRECT:topic	 polyesterW-results-de5 -> polyester-insilico.html [ SUCCESS ]
REDIRECT:topic	 polyesterW-results-de10 -> polyester-insilico.html [ SUCCESS ]
    rnaseq-brain                            html  
REDIRECT:topic	 rnaseq-brain -> rnaseq-brain.html [ SUCCESS ]
REDIRECT:topic	 brain-benchmark -> rnaseq-brain.html [ SUCCESS ]
REDIRECT:topic	 brain-uninf-benchmark -> rnaseq-brain.html [ SUCCESS ]
    rnaseq-mir200c                          html  
REDIRECT:topic	 rnaseq-mir200c -> rnaseq-mir200c.html [ SUCCESS ]
REDIRECT:topic	 mir200c-benchmark -> rnaseq-mir200c.html [ SUCCESS ]
REDIRECT:topic	 mir200c-uninf-benchmark -> rnaseq-mir200c.html [ SUCCESS ]
    scrnaseq-human                          html  
REDIRECT:topic	 scrnaseq-human -> scrnaseq-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark-mast-det -> scrnaseq-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark-mast-mean -> scrnaseq-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark-mast-uninf -> scrnaseq-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark-scdd-det -> scrnaseq-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark-scdd-mean -> scrnaseq-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark-scdd-uninf -> scrnaseq-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark-wilcox-det -> scrnaseq-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark-wilcox-mean -> scrnaseq-human.html [ SUCCESS ]
REDIRECT:topic	 human-benchmark-wilcox-uninf -> scrnaseq-human.html [ SUCCESS ]
    scrnaseq-mouse                          html  
REDIRECT:topic	 scrnaseq-mouse -> scrnaseq-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark-mast-det -> scrnaseq-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark-mast-mean -> scrnaseq-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark-mast-uninf -> scrnaseq-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark-scdd-det -> scrnaseq-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark-scdd-mean -> scrnaseq-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark-scdd-uninf -> scrnaseq-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark-wilcox-det -> scrnaseq-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark-wilcox-mean -> scrnaseq-mouse.html [ SUCCESS ]
REDIRECT:topic	 mouse-benchmark-wilcox-uninf -> scrnaseq-mouse.html [ SUCCESS ]
    sims-informative-cosine                 html  
REDIRECT:topic	 sims-informative-cosine -> sims-informative-cosine.html [ SUCCESS ]
REDIRECT:topic	 informative-cosine-benchmark-chisq4 -> sims-informative-cosine.html [ SUCCESS ]
REDIRECT:topic	 informative-cosine-benchmark-gaussian -> sims-informative-cosine.html [ SUCCESS ]
REDIRECT:topic	 informative-cosine-benchmark-t11 -> sims-informative-cosine.html [ SUCCESS ]
REDIRECT:topic	 informative-cosine-benchmark-t5 -> sims-informative-cosine.html [ SUCCESS ]
    sims-informative-cubic                  html  
REDIRECT:topic	 sims-informative-cubic -> sims-informative-cubic.html [ SUCCESS ]
REDIRECT:topic	 informative-cubic-benchmark-chisq4 -> sims-informative-cubic.html [ SUCCESS ]
REDIRECT:topic	 informative-cubic-benchmark-gaussian -> sims-informative-cubic.html [ SUCCESS ]
REDIRECT:topic	 informative-cubic-benchmark-t11 -> sims-informative-cubic.html [ SUCCESS ]
REDIRECT:topic	 informative-cubic-benchmark-t5 -> sims-informative-cubic.html [ SUCCESS ]
    sims-informative-sine                   html  
REDIRECT:topic	 sims-informative-sine -> sims-informative-sine.html [ SUCCESS ]
REDIRECT:topic	 informative-sine-benchmark-chisq4 -> sims-informative-sine.html [ SUCCESS ]
REDIRECT:topic	 informative-sine-benchmark-gaussian -> sims-informative-sine.html [ SUCCESS ]
REDIRECT:topic	 informative-sine-benchmark-t11 -> sims-informative-sine.html [ SUCCESS ]
REDIRECT:topic	 informative-sine-benchmark-t5 -> sims-informative-sine.html [ SUCCESS ]
    sims-informative-step                   html  
REDIRECT:topic	 sims-informative-step -> sims-informative-step.html [ SUCCESS ]
REDIRECT:topic	 informative-step-benchmark-chisq4 -> sims-informative-step.html [ SUCCESS ]
REDIRECT:topic	 informative-step-benchmark-gaussian -> sims-informative-step.html [ SUCCESS ]
REDIRECT:topic	 informative-step-benchmark-t11 -> sims-informative-step.html [ SUCCESS ]
REDIRECT:topic	 informative-step-benchmark-t5 -> sims-informative-step.html [ SUCCESS ]
    sims-null                               html  
REDIRECT:topic	 sims-null -> sims-null.html [ SUCCESS ]
REDIRECT:topic	 null-benchmark-chisq4 -> sims-null.html [ SUCCESS ]
REDIRECT:topic	 null-benchmark-gaussian -> sims-null.html [ SUCCESS ]
REDIRECT:topic	 null-benchmark-t11 -> sims-null.html [ SUCCESS ]
REDIRECT:topic	 null-benchmark-t5 -> sims-null.html [ SUCCESS ]
    sims-uasettings-25                      html  
REDIRECT:topic	 sims-uasettings-25 -> sims-uasettings-25.html [ SUCCESS ]
REDIRECT:topic	 uasettings-25-benchmark-bimodal -> sims-uasettings-25.html [ SUCCESS ]
REDIRECT:topic	 uasettings-25-benchmark-flattop -> sims-uasettings-25.html [ SUCCESS ]
REDIRECT:topic	 uasettings-25-benchmark-skew -> sims-uasettings-25.html [ SUCCESS ]
REDIRECT:topic	 uasettings-25-benchmark-spiky -> sims-uasettings-25.html [ SUCCESS ]
    sims-uasettings-t                       html  
REDIRECT:topic	 sims-uasettings-t -> sims-uasettings-t.html [ SUCCESS ]
REDIRECT:topic	 uasettings-t-benchmark-bimodal -> sims-uasettings-t.html [ SUCCESS ]
REDIRECT:topic	 uasettings-t-benchmark-flattop -> sims-uasettings-t.html [ SUCCESS ]
REDIRECT:topic	 uasettings-t-benchmark-skew -> sims-uasettings-t.html [ SUCCESS ]
REDIRECT:topic	 uasettings-t-benchmark-spiky -> sims-uasettings-t.html [ SUCCESS ]
    sims-uasettings                         html  
REDIRECT:topic	 sims-uasettings -> sims-uasettings.html [ SUCCESS ]
REDIRECT:topic	 uasettings-benchmark-bimodal -> sims-uasettings.html [ SUCCESS ]
REDIRECT:topic	 uasettings-benchmark-flattop -> sims-uasettings.html [ SUCCESS ]
REDIRECT:topic	 uasettings-benchmark-skew -> sims-uasettings.html [ SUCCESS ]
REDIRECT:topic	 uasettings-benchmark-spiky -> sims-uasettings.html [ SUCCESS ]
    sims-varyinginfo-discrete               html  
REDIRECT:topic	 sims-varyinginfo-discrete -> sims-varyinginfo-discrete.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-discrete-benchmark-level00 -> sims-varyinginfo-discrete.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-discrete-benchmark-level20 -> sims-varyinginfo-discrete.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-discrete-benchmark-level40 -> sims-varyinginfo-discrete.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-discrete-benchmark-level60 -> sims-varyinginfo-discrete.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-discrete-benchmark-level80 -> sims-varyinginfo-discrete.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-discrete-benchmark-level100 -> sims-varyinginfo-discrete.html [ SUCCESS ]
    sims-varyinginfo-smooth                 html  
REDIRECT:topic	 sims-varyinginfo-smooth -> sims-varyinginfo-smooth.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-smooth-benchmark-level00 -> sims-varyinginfo-smooth.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-smooth-benchmark-level20 -> sims-varyinginfo-smooth.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-smooth-benchmark-level40 -> sims-varyinginfo-smooth.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-smooth-benchmark-level60 -> sims-varyinginfo-smooth.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-smooth-benchmark-level80 -> sims-varyinginfo-smooth.html [ SUCCESS ]
REDIRECT:topic	 varyinginfo-smooth-benchmark-level100 -> sims-varyinginfo-smooth.html [ SUCCESS ]
    sims-varyingntests                      html  
REDIRECT:topic	 sims-varyingntests -> sims-varyingntests.html [ SUCCESS ]
REDIRECT:topic	 varyingntests-benchmark-n100 -> sims-varyingntests.html [ SUCCESS ]
REDIRECT:topic	 varyingntests-benchmark-n500 -> sims-varyingntests.html [ SUCCESS ]
REDIRECT:topic	 varyingntests-benchmark-n1000 -> sims-varyingntests.html [ SUCCESS ]
REDIRECT:topic	 varyingntests-benchmark-n5000 -> sims-varyingntests.html [ SUCCESS ]
REDIRECT:topic	 varyingntests-benchmark-n10000 -> sims-varyingntests.html [ SUCCESS ]
REDIRECT:topic	 varyingntests-benchmark-n50000 -> sims-varyingntests.html [ SUCCESS ]
    sims-varyingpi0-t                       html  
REDIRECT:topic	 sims-varyingpi0-t -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop05 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop10 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop20 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop30 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop40 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop50 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop60 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop70 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop80 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop90 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop95 -> sims-varyingpi0-t.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-t-benchmark-nullprop99 -> sims-varyingpi0-t.html [ SUCCESS ]
    sims-varyingpi0                         html  
REDIRECT:topic	 sims-varyingpi0 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop05 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop10 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop20 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop30 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop40 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop50 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop60 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop70 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop80 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop90 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop95 -> sims-varyingpi0.html [ SUCCESS ]
REDIRECT:topic	 varyingpi0-benchmark-nullprop99 -> sims-varyingpi0.html [ SUCCESS ]
    yeast-insilico                          html  
REDIRECT:topic	 yeast-insilico -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeast-results-de5 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeast-results-de5-uninfCov -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeast-results-de10 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeast-results-de10-uninfCov -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeast-results-null5 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeast-results-null10 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastH-results-de5 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastH-results-de5-uninfCov -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastH-results-de10 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastH-results-de10-uninfCov -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastHW-results-de5 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastHW-results-de10 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastII-results-de5 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastII-results-de5-uninfCov -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastII-results-de10 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastII-results-de10-uninfCov -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastIIH-results-de5 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastIIH-results-de5-uninfCov -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastIIH-results-de10 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastIIH-results-de10-uninfCov -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastIIHW-results-de5 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastIIHW-results-de10 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastIIW-results-de5 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastIIW-results-de10 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastW-results-de5 -> yeast-insilico.html [ SUCCESS ]
REDIRECT:topic	 yeastW-results-de10 -> yeast-insilico.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2021-01-14
** testing if installed package can be loaded from final location
snapshotDate(): 2021-01-14
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'benchmarkfdrData2019' ...
** testing if installed package can be loaded
snapshotDate(): 2021-01-14
* MD5 sums
packaged installation of 'benchmarkfdrData2019' as benchmarkfdrData2019_1.5.0.zip
* DONE (benchmarkfdrData2019)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'benchmarkfdrData2019' successfully unpacked and MD5 sums checked

Tests output


Example timings

benchmarkfdrData2019.Rcheck/examples_i386/benchmarkfdrData2019-Ex.timings

nameusersystemelapsed
chipseq-cbp0.660.060.95
chipseq-h3k4me30.670.050.85
gsa-human0.650.090.88
gsa-mouse0.710.020.87
gwas-bmi0.720.020.87
microbiome-baxter0.700.050.89
microbiome-enigma0.660.060.86
microbiome-goodrich0.670.030.88
microbiome-papa0.670.060.87
microbiome-schubert0.690.030.86
polyester-insilico0.680.050.88
rnaseq-brain0.710.030.87
rnaseq-mir200c0.650.060.86
scrnaseq-human0.680.050.85
scrnaseq-mouse0.670.060.86
sims-informative-cosine0.650.050.87
sims-informative-cubic0.660.050.86
sims-informative-sine0.690.041.14
sims-informative-step1.000.051.19
sims-null0.620.090.85
sims-uasettings-250.640.040.81
sims-uasettings-t0.640.010.82
sims-uasettings0.660.060.84
sims-varyinginfo-discrete0.640.070.83
sims-varyinginfo-smooth0.580.070.83
sims-varyingntests0.590.110.82
sims-varyingpi0-t0.670.020.83
sims-varyingpi00.660.060.85
yeast-insilico0.660.050.84

benchmarkfdrData2019.Rcheck/examples_x64/benchmarkfdrData2019-Ex.timings

nameusersystemelapsed
chipseq-cbp0.690.081.28
chipseq-h3k4me30.690.041.24
gsa-human0.690.071.22
gsa-mouse0.710.040.94
gwas-bmi0.770.021.23
microbiome-baxter0.700.041.05
microbiome-enigma0.720.051.30
microbiome-goodrich0.800.020.95
microbiome-papa0.610.121.02
microbiome-schubert0.690.051.02
polyester-insilico0.650.080.96
rnaseq-brain0.670.060.89
rnaseq-mir200c0.680.050.89
scrnaseq-human0.710.031.17
scrnaseq-mouse0.720.030.99
sims-informative-cosine0.660.060.87
sims-informative-cubic0.720.030.91
sims-informative-sine0.760.000.94
sims-informative-step0.720.030.93
sims-null0.710.040.89
sims-uasettings-250.710.041.93
sims-uasettings-t0.640.110.90
sims-uasettings0.720.060.90
sims-varyinginfo-discrete0.740.040.91
sims-varyinginfo-smooth0.670.090.94
sims-varyingntests0.750.050.93
sims-varyingpi0-t0.720.030.92
sims-varyingpi00.750.010.92
yeast-insilico0.670.080.91