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CHECK report for aracne.networks on riesling1

This page was generated on 2021-01-11 15:59:28 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE aracne.networks PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 17/385HostnameOS / ArchINSTALLBUILDCHECK
aracne.networks 1.17.0
Federico M. Giorgi , Mariano Alvarez
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/aracne.networks
Branch: master
Last Commit: 0719873
Last Changed Date: 2020-10-27 10:20:54 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: aracne.networks
Version: 1.17.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:aracne.networks.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings aracne.networks_1.17.0.tar.gz
StartedAt: 2021-01-11 11:12:42 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 11:20:12 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 449.4 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: aracne.networks.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:aracne.networks.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings aracne.networks_1.17.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/aracne.networks.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'aracne.networks/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'aracne.networks' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'aracne.networks' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 203.3Mb
  sub-directories of 1Mb or more:
    data  203.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  regulonblca.rda    8.2Mb    6.9Mb       xz
  regulonbrca.rda    5.7Mb    4.7Mb       xz
  reguloncesc.rda    9.6Mb    8.0Mb       xz
  reguloncoad.rda    7.0Mb    5.8Mb       xz
  regulonesca.rda    8.7Mb    7.0Mb       xz
  regulongbm.rda     9.2Mb    7.1Mb       xz
  regulonhnsc.rda    7.2Mb    6.0Mb       xz
  regulonkirc.rda    5.9Mb    4.9Mb       xz
  regulonkirp.rda    7.8Mb    6.5Mb       xz
  regulonlaml.rda    8.8Mb    7.0Mb       xz
  regulonlihc.rda    8.0Mb    6.7Mb       xz
  regulonluad.rda    6.8Mb    5.7Mb       xz
  regulonlusc.rda    7.7Mb    6.5Mb       xz
  regulonnet.rda    12.1Mb   10.1Mb       xz
  regulonov.rda     10.5Mb    8.6Mb       xz
  regulonpaad.rda    8.7Mb    7.1Mb       xz
  regulonpcpg.rda    9.9Mb    7.8Mb       xz
  regulonprad.rda    5.6Mb    4.7Mb       xz
  regulonread.rda    9.4Mb    7.6Mb       xz
  regulonsarc.rda    8.8Mb    7.2Mb       xz
  regulonstad.rda    9.7Mb    8.1Mb       xz
  regulontgct.rda    7.7Mb    6.3Mb       xz
  regulonthca.rda    5.2Mb    4.3Mb       xz
  regulonthym.rda    6.7Mb    5.3Mb       xz
  regulonucec.rda    8.2Mb    6.9Mb       xz
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/aracne.networks.Rcheck/00check.log'
for details.



Installation output

aracne.networks.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/aracne.networks_1.17.0.tar.gz && rm -rf aracne.networks.buildbin-libdir && mkdir aracne.networks.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aracne.networks.buildbin-libdir aracne.networks_1.17.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL aracne.networks_1.17.0.zip && rm aracne.networks_1.17.0.tar.gz aracne.networks_1.17.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 43  203M   43 88.5M    0     0  89.1M      0  0:00:02 --:--:--  0:00:02 89.1M
 90  203M   90  183M    0     0  92.0M      0  0:00:02  0:00:01  0:00:01 91.9M
100  203M  100  203M    0     0  92.4M      0  0:00:02  0:00:02 --:--:-- 92.5M

install for i386

* installing *source* package 'aracne.networks' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'aracne.networks'
    finding HTML links ... done
    aracne.networks-package                 html  
REDIRECT:topic	 aracne.networks-package -> aracne.networks-package.html [ SUCCESS ]
REDIRECT:topic	 aracne.networks -> aracne.networks-package.html [ SUCCESS ]
    regulonblca                             html  
REDIRECT:topic	 regulonblca -> regulonblca.html [ SUCCESS ]
    regulonbrca                             html  
REDIRECT:topic	 regulonbrca -> regulonbrca.html [ SUCCESS ]
    reguloncesc                             html  
REDIRECT:topic	 reguloncesc -> reguloncesc.html [ SUCCESS ]
    reguloncoad                             html  
REDIRECT:topic	 reguloncoad -> reguloncoad.html [ SUCCESS ]
    regulonesca                             html  
REDIRECT:topic	 regulonesca -> regulonesca.html [ SUCCESS ]
    regulongbm                              html  
REDIRECT:topic	 regulongbm -> regulongbm.html [ SUCCESS ]
    regulonhnsc                             html  
REDIRECT:topic	 regulonhnsc -> regulonhnsc.html [ SUCCESS ]
    regulonkirc                             html  
REDIRECT:topic	 regulonkirc -> regulonkirc.html [ SUCCESS ]
    regulonkirp                             html  
REDIRECT:topic	 regulonkirp -> regulonkirp.html [ SUCCESS ]
    regulonlaml                             html  
REDIRECT:topic	 regulonlaml -> regulonlaml.html [ SUCCESS ]
    regulonlihc                             html  
REDIRECT:topic	 regulonlihc -> regulonlihc.html [ SUCCESS ]
    regulonluad                             html  
REDIRECT:topic	 regulonluad -> regulonluad.html [ SUCCESS ]
    regulonlusc                             html  
REDIRECT:topic	 regulonlusc -> regulonlusc.html [ SUCCESS ]
    regulonnet                              html  
REDIRECT:topic	 regulonnet -> regulonnet.html [ SUCCESS ]
    regulonov                               html  
REDIRECT:topic	 regulonov -> regulonov.html [ SUCCESS ]
    regulonpaad                             html  
REDIRECT:topic	 regulonpaad -> regulonpaad.html [ SUCCESS ]
    regulonpcpg                             html  
REDIRECT:topic	 regulonpcpg -> regulonpcpg.html [ SUCCESS ]
    regulonprad                             html  
REDIRECT:topic	 regulonprad -> regulonprad.html [ SUCCESS ]
    regulonread                             html  
REDIRECT:topic	 regulonread -> regulonread.html [ SUCCESS ]
    regulonsarc                             html  
REDIRECT:topic	 regulonsarc -> regulonsarc.html [ SUCCESS ]
    regulonstad                             html  
REDIRECT:topic	 regulonstad -> regulonstad.html [ SUCCESS ]
    regulontgct                             html  
REDIRECT:topic	 regulontgct -> regulontgct.html [ SUCCESS ]
    regulonthca                             html  
REDIRECT:topic	 regulonthca -> regulonthca.html [ SUCCESS ]
    regulonthym                             html  
REDIRECT:topic	 regulonthym -> regulonthym.html [ SUCCESS ]
    regulonucec                             html  
REDIRECT:topic	 regulonucec -> regulonucec.html [ SUCCESS ]
    write.regulon                           html  
REDIRECT:topic	 write.regulon -> write.regulon.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'aracne.networks' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'aracne.networks' as aracne.networks_1.17.0.zip
* DONE (aracne.networks)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'aracne.networks' successfully unpacked and MD5 sums checked

Tests output


Example timings

aracne.networks.Rcheck/examples_i386/aracne.networks-Ex.timings

nameusersystemelapsed
aracne.networks-package1.710.022.85
regulonblca1.800.011.81
regulonbrca1.570.001.57
reguloncesc2.360.052.41
reguloncoad1.410.011.42
regulonesca2.080.042.11
regulongbm2.230.012.25
regulonhnsc1.720.021.73
regulonkirc1.450.001.46
regulonkirp2.020.012.03
regulonlaml2.030.002.03
regulonlihc1.950.001.96
regulonluad1.700.001.71
regulonlusc1.990.022.00
regulonnet2.830.012.84
regulonov2.060.002.07
regulonpaad1.960.031.98
regulonpcpg2.540.022.56
regulonprad1.490.031.52
regulonread2.530.002.53
regulonsarc1.590.001.60
regulonstad2.010.022.03
regulontgct1.720.011.73
regulonthca1.450.021.47
regulonthym1.660.001.66
regulonucec1.650.001.66
write.regulon1.660.012.56

aracne.networks.Rcheck/examples_x64/aracne.networks-Ex.timings

nameusersystemelapsed
aracne.networks-package1.940.042.49
regulonblca1.870.011.89
regulonbrca1.460.051.51
reguloncesc2.220.062.29
reguloncoad1.850.021.85
regulonesca2.030.032.07
regulongbm2.030.012.04
regulonhnsc1.780.001.79
regulonkirc1.420.001.42
regulonkirp2.020.002.02
regulonlaml2.170.032.20
regulonlihc1.940.001.94
regulonluad1.840.001.84
regulonlusc1.940.021.95
regulonnet2.860.052.91
regulonov2.190.032.22
regulonpaad1.930.011.95
regulonpcpg2.850.022.86
regulonprad1.480.001.49
regulonread2.100.022.11
regulonsarc2.320.012.34
regulonstad2.210.022.22
regulontgct1.890.041.94
regulonthca1.370.001.38
regulonthym1.270.031.30
regulonucec1.890.031.92
write.regulon2.060.032.99