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CHECK report for WES.1KG.WUGSC on riesling1

This page was generated on 2021-03-01 15:56:11 -0500 (Mon, 01 Mar 2021).

To the developers/maintainers of the WES.1KG.WUGSC package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 382/391HostnameOS / ArchINSTALLBUILDCHECK
WES.1KG.WUGSC 1.23.0
Yuchao Jiang
Snapshot Date: 2021-03-01 09:00:05 -0500 (Mon, 01 Mar 2021)
URL: https://git.bioconductor.org/packages/WES.1KG.WUGSC
Branch: master
Last Commit: 9dfca2c
Last Changed Date: 2020-10-27 10:11:05 -0500 (Tue, 27 Oct 2020)
rex3Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
riesling1Windows Server 2019 Standard / x64  OK    OK    OK  

Summary

Package: WES.1KG.WUGSC
Version: 1.23.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:WES.1KG.WUGSC.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings WES.1KG.WUGSC_1.23.0.tar.gz
StartedAt: 2021-03-01 12:03:38 -0500 (Mon, 01 Mar 2021)
EndedAt: 2021-03-01 12:04:03 -0500 (Mon, 01 Mar 2021)
EllapsedTime: 24.8 seconds
RetCode: 0
Status:   OK   
CheckDir: WES.1KG.WUGSC.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:WES.1KG.WUGSC.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings WES.1KG.WUGSC_1.23.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/WES.1KG.WUGSC.Rcheck'
* using R Under development (unstable) (2021-02-08 r79971)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'WES.1KG.WUGSC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'WES.1KG.WUGSC' version '1.23.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'WES.1KG.WUGSC' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 373.9Mb
  sub-directories of 1Mb or more:
    extdata  373.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/WES.1KG.WUGSC.Rcheck/00check.log'
for details.



Installation output

WES.1KG.WUGSC.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.173.35/BBS/3.13/data-experiment/src/contrib/WES.1KG.WUGSC_1.23.0.tar.gz && rm -rf WES.1KG.WUGSC.buildbin-libdir && mkdir WES.1KG.WUGSC.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=WES.1KG.WUGSC.buildbin-libdir WES.1KG.WUGSC_1.23.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL WES.1KG.WUGSC_1.23.0.zip && rm WES.1KG.WUGSC_1.23.0.tar.gz WES.1KG.WUGSC_1.23.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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install for i386

* installing *source* package 'WES.1KG.WUGSC' ...
** using staged installation
** inst
** help
No man pages found in package  'WES.1KG.WUGSC' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'WES.1KG.WUGSC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'WES.1KG.WUGSC' as WES.1KG.WUGSC_1.23.0.zip
* DONE (WES.1KG.WUGSC)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'WES.1KG.WUGSC' successfully unpacked and MD5 sums checked

Tests output


Example timings