Tiago Chedraoui Silva
| Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021) |
| URL: https://git.bioconductor.org/packages/TCGAbiolinksGUI.data |
| Branch: master |
| Last Commit: c01fbf8 |
| Last Changed Date: 2020-10-27 10:24:37 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-21 16:01:40 -0500 (Thu, 21 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE TCGAbiolinksGUI.data PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 356/386 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| TCGAbiolinksGUI.data 1.11.0 Tiago Chedraoui Silva
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] |
| Package: TCGAbiolinksGUI.data |
| Version: 1.11.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TCGAbiolinksGUI.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings TCGAbiolinksGUI.data_1.11.0.tar.gz |
| StartedAt: 2021-01-21 11:50:03 -0500 (Thu, 21 Jan 2021) |
| EndedAt: 2021-01-21 11:51:04 -0500 (Thu, 21 Jan 2021) |
| EllapsedTime: 61.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TCGAbiolinksGUI.data.Rcheck |
| Warnings: 0 |
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### Running command:
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### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TCGAbiolinksGUI.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings TCGAbiolinksGUI.data_1.11.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/TCGAbiolinksGUI.data.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TCGAbiolinksGUI.data/DESCRIPTION' ... OK
* this is package 'TCGAbiolinksGUI.data' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TCGAbiolinksGUI.data' can be installed ... OK
* checking installed package size ... NOTE
installed size is 20.5Mb
sub-directories of 1Mb or more:
data 20.4Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/TCGAbiolinksGUI.data.Rcheck/00check.log'
for details.
TCGAbiolinksGUI.data.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/TCGAbiolinksGUI.data_1.11.0.tar.gz && rm -rf TCGAbiolinksGUI.data.buildbin-libdir && mkdir TCGAbiolinksGUI.data.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAbiolinksGUI.data.buildbin-libdir TCGAbiolinksGUI.data_1.11.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinksGUI.data_1.11.0.zip && rm TCGAbiolinksGUI.data_1.11.0.tar.gz TCGAbiolinksGUI.data_1.11.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 20.4M 0 1213 0 0 2416 0 2:28:04 --:--:-- 2:28:04 2411
10 20.4M 10 2148k 0 0 1612k 0 0:00:12 0:00:01 0:00:11 1611k
100 20.4M 100 20.4M 0 0 13.4M 0 0:00:01 0:00:01 --:--:-- 13.3M
install for i386
* installing *source* package 'TCGAbiolinksGUI.data' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TCGAbiolinksGUI.data'
finding HTML links ... done
GDCdisease html
REDIRECT:topic GDCdisease -> GDCdisease.html [ SUCCESS ]
TCGAbiolinksGUI-data html
REDIRECT:topic TCGAbiolinksGUI.data -> TCGAbiolinksGUI-data.html [ SUCCESS ]
REDIRECT:file TCGAbiolinksGUI-data.html -> TCGAbiolinksGUI-data.html [ SUCCESS ]
gene.location.hg19 html
REDIRECT:topic gene.location.hg19 -> gene.location.hg19.html [ SUCCESS ]
gene.location.hg38 html
REDIRECT:topic gene.location.hg38 -> gene.location.hg38.html [ SUCCESS ]
glioma.gcimp.model html
REDIRECT:topic glioma.gcimp.model -> glioma.gcimp.model.html [ SUCCESS ]
glioma.idh.model html
REDIRECT:topic glioma.idh.model -> glioma.idh.model.html [ SUCCESS ]
glioma.idhmut.model html
REDIRECT:topic glioma.idhmut.model -> glioma.idhmut.model.html [ SUCCESS ]
glioma.idhwt.model html
REDIRECT:topic glioma.idhwt.model -> glioma.idhwt.model.html [ SUCCESS ]
linkedOmics.data html
REDIRECT:topic linkedOmics.data -> linkedOmics.data.html [ SUCCESS ]
maf.tumor html
REDIRECT:topic maf.tumor -> maf.tumor.html [ SUCCESS ]
probes2rm html
REDIRECT:topic probes2rm -> probes2rm.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TCGAbiolinksGUI.data' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAbiolinksGUI.data' as TCGAbiolinksGUI.data_1.11.0.zip
* DONE (TCGAbiolinksGUI.data)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'TCGAbiolinksGUI.data' successfully unpacked and MD5 sums checked