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CHECK report for TCGAMethylation450k on riesling1

This page was generated on 2021-01-18 15:58:52 -0500 (Mon, 18 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE TCGAMethylation450k PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 358/385HostnameOS / ArchINSTALLBUILDCHECK
TCGAMethylation450k 1.27.0
Sean Davis
Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/TCGAMethylation450k
Branch: master
Last Commit: b8f352a
Last Changed Date: 2020-10-27 09:54:00 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: TCGAMethylation450k
Version: 1.27.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TCGAMethylation450k.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings TCGAMethylation450k_1.27.0.tar.gz
StartedAt: 2021-01-18 11:48:24 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 11:48:43 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 19.0 seconds
RetCode: 0
Status:  OK  
CheckDir: TCGAMethylation450k.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TCGAMethylation450k.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings TCGAMethylation450k_1.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/TCGAMethylation450k.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TCGAMethylation450k/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TCGAMethylation450k' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TCGAMethylation450k' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 154.4Mb
  sub-directories of 1Mb or more:
    extdata  154.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/TCGAMethylation450k.Rcheck/00check.log'
for details.



Installation output

TCGAMethylation450k.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/TCGAMethylation450k_1.27.0.tar.gz && rm -rf TCGAMethylation450k.buildbin-libdir && mkdir TCGAMethylation450k.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAMethylation450k.buildbin-libdir TCGAMethylation450k_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL TCGAMethylation450k_1.27.0.zip && rm TCGAMethylation450k_1.27.0.tar.gz TCGAMethylation450k_1.27.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 81.0M    0  1213    0     0   8482      0  2:46:55 --:--:--  2:46:55  8482
  1 81.0M    1 1166k    0     0  1077k      0  0:01:16  0:00:01  0:01:15 1076k
 30 81.0M   30 24.6M    0     0  11.5M      0  0:00:06  0:00:02  0:00:04 11.5M
 81 81.0M   81 66.3M    0     0  21.6M      0  0:00:03  0:00:03 --:--:-- 21.6M
100 81.0M  100 81.0M    0     0  22.2M      0  0:00:03  0:00:03 --:--:-- 22.2M

install for i386

* installing *source* package 'TCGAMethylation450k' ...
** using staged installation
** inst
** help
*** installing help indices
  converting help for package 'TCGAMethylation450k'
    finding HTML links ... done
    TCGAMethylation450k-package             html  
REDIRECT:topic	 TCGAMethylation450k-package -> TCGAMethylation450k-package.html [ SUCCESS ]
REDIRECT:topic	 TCGAMethylation450k -> TCGAMethylation450k-package.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TCGAMethylation450k' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAMethylation450k' as TCGAMethylation450k_1.27.0.zip
* DONE (TCGAMethylation450k)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'TCGAMethylation450k' successfully unpacked and MD5 sums checked

Tests output


Example timings