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INSTALL report for SomaticCancerAlterations on riesling1

This page was generated on 2021-01-18 15:58:51 -0500 (Mon, 18 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE SomaticCancerAlterations PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 340/385HostnameOS / ArchINSTALLBUILDCHECK
SomaticCancerAlterations 1.27.1
Julian Gehring
Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/SomaticCancerAlterations
Branch: master
Last Commit: 6c98820
Last Changed Date: 2020-11-28 13:58:54 -0500 (Sat, 28 Nov 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  OK 

Summary

Package: SomaticCancerAlterations
Version: 1.27.1
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/SomaticCancerAlterations_1.27.1.tar.gz && rm -rf SomaticCancerAlterations.buildbin-libdir && mkdir SomaticCancerAlterations.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticCancerAlterations.buildbin-libdir SomaticCancerAlterations_1.27.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SomaticCancerAlterations_1.27.1.zip && rm SomaticCancerAlterations_1.27.1.tar.gz SomaticCancerAlterations_1.27.1.zip
StartedAt: 2021-01-18 10:08:06 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 10:08:19 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 13.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/SomaticCancerAlterations_1.27.1.tar.gz && rm -rf SomaticCancerAlterations.buildbin-libdir && mkdir SomaticCancerAlterations.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticCancerAlterations.buildbin-libdir SomaticCancerAlterations_1.27.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SomaticCancerAlterations_1.27.1.zip && rm SomaticCancerAlterations_1.27.1.tar.gz SomaticCancerAlterations_1.27.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100 4465k  100 4465k    0     0  55.1M      0 --:--:-- --:--:-- --:--:-- 55.1M

install for i386

* installing *source* package 'SomaticCancerAlterations' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SomaticCancerAlterations'
    finding HTML links ... done
    SomaticCancerAlterations-package        html  
REDIRECT:topic	 SomaticCancerAlterations -> SomaticCancerAlterations-package.html [ SUCCESS ]
REDIRECT:topic	 SomaticCancerAlterations-package -> SomaticCancerAlterations-package.html [ SUCCESS ]
    all-data                                html  
REDIRECT:topic	 SomaticCancerAlterations-data -> all-data.html [ SUCCESS ]
REDIRECT:topic	 meta -> all-data.html [ SUCCESS ]
REDIRECT:topic	 blca_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 cesc_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 gbm_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 hnsc_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 kirc_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 lgg_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 luad_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 lusc_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 ov_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 paad_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 prad_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 skcm_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 stad_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 thca_tcga -> all-data.html [ SUCCESS ]
REDIRECT:topic	 ucec_tcga -> all-data.html [ SUCCESS ]
REDIRECT:file	 all-data.html -> all-data.html [ SUCCESS ]
    all-functions                           html  
REDIRECT:topic	 SomaticCancerAlterations-functions -> all-functions.html [ SUCCESS ]
REDIRECT:topic	 scaListDatasets -> all-functions.html [ SUCCESS ]
REDIRECT:topic	 scaLoadDatasets -> all-functions.html [ SUCCESS ]
REDIRECT:topic	 scaMetadata -> all-functions.html [ SUCCESS ]
REDIRECT:file	 all-functions.html -> all-functions.html [ SUCCESS ]
    all-helpers                             html  
REDIRECT:topic	 SomaticCancerAlterations-helper-functions -> all-helpers.html [ SUCCESS ]
REDIRECT:topic	 ncbi2hg -> all-helpers.html [ SUCCESS ]
REDIRECT:topic	 hg2ncbi -> all-helpers.html [ SUCCESS ]
REDIRECT:topic	 seqchr -> all-helpers.html [ SUCCESS ]
REDIRECT:file	 all-helpers.html -> all-helpers.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SomaticCancerAlterations' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SomaticCancerAlterations' as SomaticCancerAlterations_1.27.1.zip
* DONE (SomaticCancerAlterations)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'SomaticCancerAlterations' successfully unpacked and MD5 sums checked