Alejandro Reyes
| Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021) |
| URL: https://git.bioconductor.org/packages/Single.mTEC.Transcriptomes |
| Branch: master |
| Last Commit: 90db919 |
| Last Changed Date: 2020-10-27 10:16:10 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-21 16:01:39 -0500 (Thu, 21 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE Single.mTEC.Transcriptomes PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 335/386 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| Single.mTEC.Transcriptomes 1.19.0 Alejandro Reyes
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] |
| Package: Single.mTEC.Transcriptomes |
| Version: 1.19.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Single.mTEC.Transcriptomes.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Single.mTEC.Transcriptomes_1.19.0.tar.gz |
| StartedAt: 2021-01-21 11:47:48 -0500 (Thu, 21 Jan 2021) |
| EndedAt: 2021-01-21 11:51:10 -0500 (Thu, 21 Jan 2021) |
| EllapsedTime: 202.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Single.mTEC.Transcriptomes.Rcheck |
| Warnings: 0 |
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### Running command:
###
### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Single.mTEC.Transcriptomes.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Single.mTEC.Transcriptomes_1.19.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/Single.mTEC.Transcriptomes.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Single.mTEC.Transcriptomes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Single.mTEC.Transcriptomes' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Single.mTEC.Transcriptomes' can be installed ... OK
* checking installed package size ... NOTE
installed size is 895.3Mb
sub-directories of 1Mb or more:
data 895.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/Single.mTEC.Transcriptomes.Rcheck/00check.log'
for details.
Single.mTEC.Transcriptomes.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/Single.mTEC.Transcriptomes_1.19.0.tar.gz && rm -rf Single.mTEC.Transcriptomes.buildbin-libdir && mkdir Single.mTEC.Transcriptomes.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Single.mTEC.Transcriptomes.buildbin-libdir Single.mTEC.Transcriptomes_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Single.mTEC.Transcriptomes_1.19.0.zip && rm Single.mTEC.Transcriptomes_1.19.0.tar.gz Single.mTEC.Transcriptomes_1.19.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 895M 0 1211 0 0 6475 0 40:16:17 --:--:-- 40:16:17 6441
5 895M 5 46.7M 0 0 40.3M 0 0:00:22 0:00:01 0:00:21 40.2M
17 895M 17 152M 0 0 70.4M 0 0:00:12 0:00:02 0:00:10 70.4M
25 895M 25 225M 0 0 71.3M 0 0:00:12 0:00:03 0:00:09 71.3M
33 895M 33 297M 0 0 71.3M 0 0:00:12 0:00:04 0:00:08 71.3M
43 895M 43 390M 0 0 74.9M 0 0:00:11 0:00:05 0:00:06 77.7M
45 895M 45 409M 0 0 66.2M 0 0:00:13 0:00:06 0:00:07 72.1M
49 895M 49 440M 0 0 61.5M 0 0:00:14 0:00:07 0:00:07 57.7M
57 895M 57 513M 0 0 62.9M 0 0:00:14 0:00:08 0:00:06 57.5M
69 895M 69 619M 0 0 67.5M 0 0:00:13 0:00:09 0:00:04 64.4M
79 895M 79 711M 0 0 69.9M 0 0:00:12 0:00:10 0:00:02 64.7M
82 895M 82 734M 0 0 65.6M 0 0:00:13 0:00:11 0:00:02 64.8M
88 895M 88 788M 0 0 64.8M 0 0:00:13 0:00:12 0:00:01 69.6M
94 895M 94 847M 0 0 64.3M 0 0:00:13 0:00:13 --:--:-- 66.7M
100 895M 100 895M 0 0 65.2M 0 0:00:13 0:00:13 --:--:-- 60.5M
install for i386
* installing *source* package 'Single.mTEC.Transcriptomes' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Single.mTEC.Transcriptomes'
finding HTML links ... done
Single.mTec.Transcriptomes-package html
REDIRECT:topic Single.mTec.Transcriptomes-package -> Single.mTec.Transcriptomes-package.html [ SUCCESS ]
aireDependentSansom html
REDIRECT:topic aireDependentSansom -> aireDependentSansom.html [ SUCCESS ]
biotype html
REDIRECT:topic biotype -> biotype.html [ SUCCESS ]
biotypesHuman html
REDIRECT:topic biotypesHuman -> biotypesHuman.html [ SUCCESS ]
cea1Coexpression html
REDIRECT:topic cea1Coexpression -> cea1Coexpression.html [ SUCCESS ]
corMatsNoMarker html
REDIRECT:topic corMatSp -> corMatsNoMarker.html [ SUCCESS ]
REDIRECT:topic corMatSpNoMarker -> corMatsNoMarker.html [ SUCCESS ]
REDIRECT:topic corMatsNoMarker -> corMatsNoMarker.html [ SUCCESS ]
deGenesNone html
REDIRECT:topic deGenesNone -> deGenesNone.html [ SUCCESS ]
deGenesSansom html
REDIRECT:topic deGenesSansom -> deGenesSansom.html [ SUCCESS ]
dxdATAC html
REDIRECT:topic dxdATAC -> dxdATAC.html [ SUCCESS ]
fantom html
REDIRECT:topic dxdFANTOM -> fantom.html [ SUCCESS ]
REDIRECT:topic fantom -> fantom.html [ SUCCESS ]
geneNames html
REDIRECT:topic geneNames -> geneNames.html [ SUCCESS ]
geneNamesHuman html
REDIRECT:topic geneNamesHuman -> geneNamesHuman.html [ SUCCESS ]
geneRanges html
REDIRECT:topic geneRanges -> geneRanges.html [ SUCCESS ]
mTECdxd html
REDIRECT:topic dxd -> mTECdxd.html [ SUCCESS ]
REDIRECT:topic mTECdxd -> mTECdxd.html [ SUCCESS ]
muc1Coexpression html
REDIRECT:topic muc1Coexpression -> muc1Coexpression.html [ SUCCESS ]
nomarkerCellsClustering html
REDIRECT:topic nomarkerCellsClustering -> nomarkerCellsClustering.html [ SUCCESS ]
percentsGG html
REDIRECT:topic percentsGG -> percentsGG.html [ SUCCESS ]
permutationResults html
REDIRECT:topic permsAllClusters -> permutationResults.html [ SUCCESS ]
REDIRECT:topic permutationResults -> permutationResults.html [ SUCCESS ]
REDIRECT:topic realAllClusters -> permutationResults.html [ SUCCESS ]
scLVM_output html
REDIRECT:topic Ycorr -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic beta -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic beta0 -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic h5GeneNames -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic heter -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic scLVM_output -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic vars -> scLVM_output.html [ SUCCESS ]
tras html
REDIRECT:topic tras -> tras.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Single.mTEC.Transcriptomes' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Single.mTEC.Transcriptomes' as Single.mTEC.Transcriptomes_1.19.0.zip
* DONE (Single.mTEC.Transcriptomes)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'Single.mTEC.Transcriptomes' successfully unpacked and MD5 sums checked