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CHECK report for Single.mTEC.Transcriptomes on riesling1

This page was generated on 2021-01-21 16:01:39 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE Single.mTEC.Transcriptomes PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 335/386HostnameOS / ArchINSTALLBUILDCHECK
Single.mTEC.Transcriptomes 1.19.0
Alejandro Reyes
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/Single.mTEC.Transcriptomes
Branch: master
Last Commit: 90db919
Last Changed Date: 2020-10-27 10:16:10 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: Single.mTEC.Transcriptomes
Version: 1.19.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Single.mTEC.Transcriptomes.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Single.mTEC.Transcriptomes_1.19.0.tar.gz
StartedAt: 2021-01-21 11:47:48 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:51:10 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 202.4 seconds
RetCode: 0
Status:  OK  
CheckDir: Single.mTEC.Transcriptomes.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Single.mTEC.Transcriptomes.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Single.mTEC.Transcriptomes_1.19.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/Single.mTEC.Transcriptomes.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Single.mTEC.Transcriptomes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Single.mTEC.Transcriptomes' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Single.mTEC.Transcriptomes' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 895.3Mb
  sub-directories of 1Mb or more:
    data  895.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/Single.mTEC.Transcriptomes.Rcheck/00check.log'
for details.



Installation output

Single.mTEC.Transcriptomes.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/Single.mTEC.Transcriptomes_1.19.0.tar.gz && rm -rf Single.mTEC.Transcriptomes.buildbin-libdir && mkdir Single.mTEC.Transcriptomes.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Single.mTEC.Transcriptomes.buildbin-libdir Single.mTEC.Transcriptomes_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Single.mTEC.Transcriptomes_1.19.0.zip && rm Single.mTEC.Transcriptomes_1.19.0.tar.gz Single.mTEC.Transcriptomes_1.19.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  895M    0  1211    0     0   6475      0 40:16:17 --:--:-- 40:16:17  6441
  5  895M    5 46.7M    0     0  40.3M      0  0:00:22  0:00:01  0:00:21 40.2M
 17  895M   17  152M    0     0  70.4M      0  0:00:12  0:00:02  0:00:10 70.4M
 25  895M   25  225M    0     0  71.3M      0  0:00:12  0:00:03  0:00:09 71.3M
 33  895M   33  297M    0     0  71.3M      0  0:00:12  0:00:04  0:00:08 71.3M
 43  895M   43  390M    0     0  74.9M      0  0:00:11  0:00:05  0:00:06 77.7M
 45  895M   45  409M    0     0  66.2M      0  0:00:13  0:00:06  0:00:07 72.1M
 49  895M   49  440M    0     0  61.5M      0  0:00:14  0:00:07  0:00:07 57.7M
 57  895M   57  513M    0     0  62.9M      0  0:00:14  0:00:08  0:00:06 57.5M
 69  895M   69  619M    0     0  67.5M      0  0:00:13  0:00:09  0:00:04 64.4M
 79  895M   79  711M    0     0  69.9M      0  0:00:12  0:00:10  0:00:02 64.7M
 82  895M   82  734M    0     0  65.6M      0  0:00:13  0:00:11  0:00:02 64.8M
 88  895M   88  788M    0     0  64.8M      0  0:00:13  0:00:12  0:00:01 69.6M
 94  895M   94  847M    0     0  64.3M      0  0:00:13  0:00:13 --:--:-- 66.7M
100  895M  100  895M    0     0  65.2M      0  0:00:13  0:00:13 --:--:-- 60.5M

install for i386

* installing *source* package 'Single.mTEC.Transcriptomes' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Single.mTEC.Transcriptomes'
    finding HTML links ... done
    Single.mTec.Transcriptomes-package      html  
REDIRECT:topic	 Single.mTec.Transcriptomes-package -> Single.mTec.Transcriptomes-package.html [ SUCCESS ]
    aireDependentSansom                     html  
REDIRECT:topic	 aireDependentSansom -> aireDependentSansom.html [ SUCCESS ]
    biotype                                 html  
REDIRECT:topic	 biotype -> biotype.html [ SUCCESS ]
    biotypesHuman                           html  
REDIRECT:topic	 biotypesHuman -> biotypesHuman.html [ SUCCESS ]
    cea1Coexpression                        html  
REDIRECT:topic	 cea1Coexpression -> cea1Coexpression.html [ SUCCESS ]
    corMatsNoMarker                         html  
REDIRECT:topic	 corMatSp -> corMatsNoMarker.html [ SUCCESS ]
REDIRECT:topic	 corMatSpNoMarker -> corMatsNoMarker.html [ SUCCESS ]
REDIRECT:topic	 corMatsNoMarker -> corMatsNoMarker.html [ SUCCESS ]
    deGenesNone                             html  
REDIRECT:topic	 deGenesNone -> deGenesNone.html [ SUCCESS ]
    deGenesSansom                           html  
REDIRECT:topic	 deGenesSansom -> deGenesSansom.html [ SUCCESS ]
    dxdATAC                                 html  
REDIRECT:topic	 dxdATAC -> dxdATAC.html [ SUCCESS ]
    fantom                                  html  
REDIRECT:topic	 dxdFANTOM -> fantom.html [ SUCCESS ]
REDIRECT:topic	 fantom -> fantom.html [ SUCCESS ]
    geneNames                               html  
REDIRECT:topic	 geneNames -> geneNames.html [ SUCCESS ]
    geneNamesHuman                          html  
REDIRECT:topic	 geneNamesHuman -> geneNamesHuman.html [ SUCCESS ]
    geneRanges                              html  
REDIRECT:topic	 geneRanges -> geneRanges.html [ SUCCESS ]
    mTECdxd                                 html  
REDIRECT:topic	 dxd -> mTECdxd.html [ SUCCESS ]
REDIRECT:topic	 mTECdxd -> mTECdxd.html [ SUCCESS ]
    muc1Coexpression                        html  
REDIRECT:topic	 muc1Coexpression -> muc1Coexpression.html [ SUCCESS ]
    nomarkerCellsClustering                 html  
REDIRECT:topic	 nomarkerCellsClustering -> nomarkerCellsClustering.html [ SUCCESS ]
    percentsGG                              html  
REDIRECT:topic	 percentsGG -> percentsGG.html [ SUCCESS ]
    permutationResults                      html  
REDIRECT:topic	 permsAllClusters -> permutationResults.html [ SUCCESS ]
REDIRECT:topic	 permutationResults -> permutationResults.html [ SUCCESS ]
REDIRECT:topic	 realAllClusters -> permutationResults.html [ SUCCESS ]
    scLVM_output                            html  
REDIRECT:topic	 Ycorr -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic	 beta -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic	 beta0 -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic	 h5GeneNames -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic	 heter -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic	 scLVM_output -> scLVM_output.html [ SUCCESS ]
REDIRECT:topic	 vars -> scLVM_output.html [ SUCCESS ]
    tras                                    html  
REDIRECT:topic	 tras -> tras.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Single.mTEC.Transcriptomes' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Single.mTEC.Transcriptomes' as Single.mTEC.Transcriptomes_1.19.0.zip
* DONE (Single.mTEC.Transcriptomes)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'Single.mTEC.Transcriptomes' successfully unpacked and MD5 sums checked

Tests output


Example timings