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INSTALL report for RTCGA.rnaseq on riesling1

This page was generated on 2021-01-11 15:59:33 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE RTCGA.rnaseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 317/385HostnameOS / ArchINSTALLBUILDCHECK
RTCGA.rnaseq 20151101.21.0
Marcin Kosinski
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/RTCGA.rnaseq
Branch: master
Last Commit: 9d5127b
Last Changed Date: 2020-10-27 10:13:53 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  WARNINGS 

Summary

Package: RTCGA.rnaseq
Version: 20151101.21.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.rnaseq_20151101.21.0.tar.gz && rm -rf RTCGA.rnaseq.buildbin-libdir && mkdir RTCGA.rnaseq.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.rnaseq.buildbin-libdir RTCGA.rnaseq_20151101.21.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.rnaseq_20151101.21.0.zip && rm RTCGA.rnaseq_20151101.21.0.tar.gz RTCGA.rnaseq_20151101.21.0.zip
StartedAt: 2021-01-11 10:20:50 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 10:25:54 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 303.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.rnaseq_20151101.21.0.tar.gz && rm -rf RTCGA.rnaseq.buildbin-libdir && mkdir RTCGA.rnaseq.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.rnaseq.buildbin-libdir RTCGA.rnaseq_20151101.21.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.rnaseq_20151101.21.0.zip && rm RTCGA.rnaseq_20151101.21.0.tar.gz RTCGA.rnaseq_20151101.21.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3  612M    3 24.4M    0     0  28.7M      0  0:00:21 --:--:--  0:00:21 28.7M
 18  612M   18  111M    0     0  60.2M      0  0:00:10  0:00:01  0:00:09 60.2M
 31  612M   31  193M    0     0  68.0M      0  0:00:09  0:00:02  0:00:07 68.0M
 40  612M   40  245M    0     0  63.7M      0  0:00:09  0:00:03  0:00:06 63.7M
 50  612M   50  310M    0     0  64.1M      0  0:00:09  0:00:04  0:00:05 64.0M
 60  612M   60  367M    0     0  62.8M      0  0:00:09  0:00:05  0:00:04 68.6M
 68  612M   68  419M    0     0  61.3M      0  0:00:09  0:00:06  0:00:03 61.6M
 77  612M   77  473M    0     0  60.3M      0  0:00:10  0:00:07  0:00:03 55.9M
 90  612M   90  557M    0     0  62.9M      0  0:00:09  0:00:08  0:00:01 62.3M
 99  612M   99  608M    0     0  61.7M      0  0:00:09  0:00:09 --:--:-- 59.4M
100  612M  100  612M    0     0  61.9M      0  0:00:09  0:00:09 --:--:-- 60.6M

install for i386

* installing *source* package 'RTCGA.rnaseq' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RTCGA.rnaseq'
    finding HTML links ... done
    rnaseq                                  html  
REDIRECT:topic	 ACC.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 ACC.rnaseq,BLCA.rnaseq,BRCA.rnaseq,CESC.rnaseq,CHOL.rnaseq,COAD.rnaseq,COADREAD.rnaseq,DLBC.rnaseq,ESCA.rnaseq,GBMLGG.rnaseq,GBM.rnaseq,HNSC.rnaseq,KICH.rnaseq,KIPAN.rnaseq,KIRC.rnaseq,KIRP.rnaseq,LAML.rnaseq,LGG.rnaseq,LIHC.rnaseq,LUAD.rnaseq,LUSC.rnaseq,OV.rnaseq,PAAD.rnaseq,PCPG.rnaseq,PRAD.rnaseq,READ.rnaseq,SARC.rnaseq,SKCM.rnaseq,STAD.rnaseq,STES.rnaseq,TGCT.rnaseq,THCA.rnaseq,THYM.rnaseq,UCEC.rnaseq,UCS.rnaseq,UVM.rnaseq -> rnaseq.html [ FAIL ]
REDIRECT:topic	 BLCA.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 BRCA.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 CESC.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 CHOL.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 COADREAD.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 COAD.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 DLBC.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 ESCA.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 GBMLGG.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 GBM.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 HNSC.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 KICH.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 KIPAN.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 KIRC.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 KIRP.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 LAML.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 LGG.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 LIHC.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 LUAD.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 LUSC.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 OV.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 PAAD.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 PCPG.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 PRAD.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 READ.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 SARC.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 SKCM.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 STAD.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 STES.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 TGCT.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 THCA.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 THYM.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 UCEC.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 UCS.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 UVM.rnaseq -> rnaseq.html [ SUCCESS ]
REDIRECT:topic	 rnaseq -> rnaseq.html [ SUCCESS ]
    finding level-2 HTML links ... done

Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/RTCGA.rnaseq.buildbin-libdir/00LOCK-RTCGA.rnaseq/00new/RTCGA.rnaseq/help/ACC.rnaseq,BLCA.rnaseq,BRCA.rnaseq,CESC.rnaseq,CHOL.rnaseq,COAD.rnaseq,COADREAD.rnaseq,DLBC.rnaseq,ESCA.rnaseq,GBMLGG.rnaseq,GBM.rnaseq,HNSC.rnaseq,KICH.rnaseq,KIPAN.rnaseq,KIRC.rnaseq,KIRP.rnaseq,LAML.rnaseq,LGG.rnaseq,LIHC.rnaseq,LUAD.rnaseq,LUSC.rnaseq,OV.rnaseq,PAAD.rnaseq,PCPG.rnaseq,PRAD.rnaseq,READ.rnaseq,SARC.rnaseq,SKCM.rnaseq,STAD.rnaseq,STES.rnaseq,TGCT.rnaseq,THCA.rnaseq,THYM.rnaseq,UCEC.rnaseq,UCS.rnaseq,UVM.rnaseq.html': No such file or directory
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RTCGA.rnaseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA.rnaseq' as RTCGA.rnaseq_20151101.21.0.zip
* DONE (RTCGA.rnaseq)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'RTCGA.rnaseq' successfully unpacked and MD5 sums checked