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INSTALL report for RTCGA.mutations on riesling1

This page was generated on 2021-01-21 16:01:38 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE RTCGA.mutations PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 315/386HostnameOS / ArchINSTALLBUILDCHECK
RTCGA.mutations 20151101.21.0
Marcin Kosinski
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/RTCGA.mutations
Branch: master
Last Commit: 61c8ad9
Last Changed Date: 2020-10-27 10:13:48 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  WARNINGS 

Summary

Package: RTCGA.mutations
Version: 20151101.21.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.mutations_20151101.21.0.tar.gz && rm -rf RTCGA.mutations.buildbin-libdir && mkdir RTCGA.mutations.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.mutations.buildbin-libdir RTCGA.mutations_20151101.21.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.mutations_20151101.21.0.zip && rm RTCGA.mutations_20151101.21.0.tar.gz RTCGA.mutations_20151101.21.0.zip
StartedAt: 2021-01-21 10:19:18 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 10:22:45 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 207.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.mutations_20151101.21.0.tar.gz && rm -rf RTCGA.mutations.buildbin-libdir && mkdir RTCGA.mutations.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.mutations.buildbin-libdir RTCGA.mutations_20151101.21.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.mutations_20151101.21.0.zip && rm RTCGA.mutations_20151101.21.0.tar.gz RTCGA.mutations_20151101.21.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  103M    0  307k    0     0  3308k      0  0:00:32 --:--:--  0:00:32 3308k
 85  103M   85 88.5M    0     0  82.0M      0  0:00:01  0:00:01 --:--:-- 81.9M
100  103M  100  103M    0     0  85.4M      0  0:00:01  0:00:01 --:--:-- 85.4M

install for i386

* installing *source* package 'RTCGA.mutations' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RTCGA.mutations'
    finding HTML links ... done
    mutations                               html  
REDIRECT:topic	 ACC.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 ACC.mutations,BLCA.mutations,BRCA.mutations,CESC.mutations,CHOL.mutations,COAD.mutations,COADREAD.mutations,DLBC.mutations,ESCA.mutations,GBMLGG.mutations,GBM.mutations,HNSC.mutations,KICH.mutations,KIPAN.mutations,KIRC.mutations,KIRP.mutations,LAML.mutations,LGG.mutations,LIHC.mutations,LUAD.mutations,LUSC.mutations,OV.mutations,PAAD.mutations,PCPG.mutations,PRAD.mutations,READ.mutations,SARC.mutations,SKCM.mutations,STAD.mutations,STES.mutations,TGCT.mutations,THCA.mutations,UCEC.mutations,UCS.mutations,UVM.mutations -> mutations.html [ FAIL ]
REDIRECT:topic	 BLCA.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 BRCA.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 CESC.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 CHOL.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 COAD.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 COADREAD.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 DLBC.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 ESCA.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 GBM.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 GBMLGG.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 HNSC.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 KICH.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 KIPAN.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 KIRC.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 KIRP.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 LAML.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 LGG.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 LIHC.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 LUAD.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 LUSC.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 OV.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 PAAD.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 PCPG.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 PRAD.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 READ.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 SARC.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 SKCM.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 STAD.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 STES.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 TGCT.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 THCA.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 UCEC.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 UCS.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 UVM.mutations -> mutations.html [ SUCCESS ]
REDIRECT:topic	 mutations -> mutations.html [ SUCCESS ]
    finding level-2 HTML links ... done

Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/RTCGA.mutations.buildbin-libdir/00LOCK-RTCGA.mutations/00new/RTCGA.mutations/help/ACC.mutations,BLCA.mutations,BRCA.mutations,CESC.mutations,CHOL.mutations,COAD.mutations,COADREAD.mutations,DLBC.mutations,ESCA.mutations,GBMLGG.mutations,GBM.mutations,HNSC.mutations,KICH.mutations,KIPAN.mutations,KIRC.mutations,KIRP.mutations,LAML.mutations,LGG.mutations,LIHC.mutations,LUAD.mutations,LUSC.mutations,OV.mutations,PAAD.mutations,PCPG.mutations,PRAD.mutations,READ.mutations,SARC.mutations,SKCM.mutations,STAD.mutations,STES.mutations,TGCT.mutations,THCA.mutations,UCEC.mutations,UCS.mutations,UVM.mutations.html': No such file or directory
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RTCGA.mutations' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA.mutations' as RTCGA.mutations_20151101.21.0.zip
* DONE (RTCGA.mutations)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'RTCGA.mutations' successfully unpacked and MD5 sums checked