Marcin Kosinski
| Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021) |
| URL: https://git.bioconductor.org/packages/RTCGA.methylation |
| Branch: master |
| Last Commit: 7e0854d |
| Last Changed Date: 2020-10-27 10:16:33 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-14 15:59:11 -0500 (Thu, 14 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE RTCGA.methylation PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 312/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| RTCGA.methylation 1.19.0 Marcin Kosinski
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | [ OK ] | OK | WARNINGS |
| Package: RTCGA.methylation |
| Version: 1.19.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.methylation_1.19.0.tar.gz && rm -rf RTCGA.methylation.buildbin-libdir && mkdir RTCGA.methylation.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.methylation.buildbin-libdir RTCGA.methylation_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.methylation_1.19.0.zip && rm RTCGA.methylation_1.19.0.tar.gz RTCGA.methylation_1.19.0.zip |
| StartedAt: 2021-01-14 10:16:55 -0500 (Thu, 14 Jan 2021) |
| EndedAt: 2021-01-14 10:21:12 -0500 (Thu, 14 Jan 2021) |
| EllapsedTime: 257.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.methylation_1.19.0.tar.gz && rm -rf RTCGA.methylation.buildbin-libdir && mkdir RTCGA.methylation.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.methylation.buildbin-libdir RTCGA.methylation_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.methylation_1.19.0.zip && rm RTCGA.methylation_1.19.0.tar.gz RTCGA.methylation_1.19.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
4 622M 4 25.5M 0 0 55.4M 0 0:00:11 --:--:-- 0:00:11 55.4M
20 622M 20 125M 0 0 86.1M 0 0:00:07 0:00:01 0:00:06 86.0M
37 622M 37 231M 0 0 94.0M 0 0:00:06 0:00:02 0:00:04 94.0M
50 622M 50 313M 0 0 90.6M 0 0:00:06 0:00:03 0:00:03 90.6M
65 622M 65 405M 0 0 90.8M 0 0:00:06 0:00:04 0:00:02 90.8M
74 622M 74 465M 0 0 84.3M 0 0:00:07 0:00:05 0:00:02 86.9M
81 622M 81 509M 0 0 77.4M 0 0:00:08 0:00:06 0:00:02 74.9M
90 622M 90 566M 0 0 75.2M 0 0:00:08 0:00:07 0:00:01 66.0M
100 622M 100 622M 0 0 76.7M 0 0:00:08 0:00:08 --:--:-- 66.4M
install for i386
* installing *source* package 'RTCGA.methylation' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RTCGA.methylation'
finding HTML links ... done
methylation html
REDIRECT:topic BRCA.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic BRCA.methylation,COAD.methylation,COADREAD.methylation,GBM.methylation,GBMLGG.methylation,KIPAN.methylation,KIRC.methylation,KIRP.methylation,LAML.methylation,LUAD.methylation,LUSC.methylation,OV.methylation,OV.methylation1,OV.methylation2,READ.methylation,STAD.methylation,STES.methylation,UCEC.methylation -> methylation.html [ FAIL ]
REDIRECT:topic COAD.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic COADREAD.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic GBM.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic GBMLGG.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic KIPAN.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic KIRC.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic KIRP.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic LAML.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic LUAD.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic LUSC.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic OV.methylation1 -> methylation.html [ SUCCESS ]
REDIRECT:topic OV.methylation2 -> methylation.html [ SUCCESS ]
REDIRECT:topic READ.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic STAD.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic STES.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic UCEC.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic methylation -> methylation.html [ SUCCESS ]
finding level-2 HTML links ... done
Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/RTCGA.methylation.buildbin-libdir/00LOCK-RTCGA.methylation/00new/RTCGA.methylation/help/BRCA.methylation,COAD.methylation,COADREAD.methylation,GBM.methylation,GBMLGG.methylation,KIPAN.methylation,KIRC.methylation,KIRP.methylation,LAML.methylation,LUAD.methylation,LUSC.methylation,OV.methylation,OV.methylation1,OV.methylation2,READ.methylation,STAD.methylation,STES.methylation,UCEC.methylation.html': No such file or directory
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RTCGA.methylation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA.methylation' as RTCGA.methylation_1.19.0.zip
* DONE (RTCGA.methylation)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'RTCGA.methylation' successfully unpacked and MD5 sums checked