Marcin Kosinski
| Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021) |
| URL: https://git.bioconductor.org/packages/RTCGA.methylation |
| Branch: master |
| Last Commit: 7e0854d |
| Last Changed Date: 2020-10-27 10:16:33 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-14 15:59:11 -0500 (Thu, 14 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE RTCGA.methylation PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 312/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| RTCGA.methylation 1.19.0 Marcin Kosinski
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ WARNINGS ] |
| Package: RTCGA.methylation |
| Version: 1.19.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RTCGA.methylation.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RTCGA.methylation_1.19.0.tar.gz |
| StartedAt: 2021-01-14 11:39:47 -0500 (Thu, 14 Jan 2021) |
| EndedAt: 2021-01-14 11:42:17 -0500 (Thu, 14 Jan 2021) |
| EllapsedTime: 150.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: RTCGA.methylation.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RTCGA.methylation.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RTCGA.methylation_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/RTCGA.methylation.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RTCGA.methylation/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTCGA.methylation' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RTCGA.methylation' can be installed ... WARNING
Found the following significant warnings:
Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/RTCGA.methylation.buildbin-libdir/00LOCK-RTCGA.methylation/00new/RTCGA.methylation/help/BRCA.methylation,COAD.methylation,COADREAD.methylation,GBM.methylation,GBMLGG.methylation,KIPAN.methylation,KIRC.methylation,KIRP.methylation,LAML.methylation,LUAD.methylation,LUSC.methylation,OV.methylation,OV.methylation1,OV.methylation2,READ.methylation,STAD.methylation,STES.methylation,UCEC.methylation.html': No such file or directory
See 'D:/biocbuild/bbs-3.13-data-experiment/meat/RTCGA.methylation.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 672.1Mb
sub-directories of 1Mb or more:
data 672.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/RTCGA.methylation.Rcheck/00check.log'
for details.
RTCGA.methylation.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.methylation_1.19.0.tar.gz && rm -rf RTCGA.methylation.buildbin-libdir && mkdir RTCGA.methylation.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.methylation.buildbin-libdir RTCGA.methylation_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.methylation_1.19.0.zip && rm RTCGA.methylation_1.19.0.tar.gz RTCGA.methylation_1.19.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
4 622M 4 25.5M 0 0 55.4M 0 0:00:11 --:--:-- 0:00:11 55.4M
20 622M 20 125M 0 0 86.1M 0 0:00:07 0:00:01 0:00:06 86.0M
37 622M 37 231M 0 0 94.0M 0 0:00:06 0:00:02 0:00:04 94.0M
50 622M 50 313M 0 0 90.6M 0 0:00:06 0:00:03 0:00:03 90.6M
65 622M 65 405M 0 0 90.8M 0 0:00:06 0:00:04 0:00:02 90.8M
74 622M 74 465M 0 0 84.3M 0 0:00:07 0:00:05 0:00:02 86.9M
81 622M 81 509M 0 0 77.4M 0 0:00:08 0:00:06 0:00:02 74.9M
90 622M 90 566M 0 0 75.2M 0 0:00:08 0:00:07 0:00:01 66.0M
100 622M 100 622M 0 0 76.7M 0 0:00:08 0:00:08 --:--:-- 66.4M
install for i386
* installing *source* package 'RTCGA.methylation' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RTCGA.methylation'
finding HTML links ... done
methylation html
REDIRECT:topic BRCA.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic BRCA.methylation,COAD.methylation,COADREAD.methylation,GBM.methylation,GBMLGG.methylation,KIPAN.methylation,KIRC.methylation,KIRP.methylation,LAML.methylation,LUAD.methylation,LUSC.methylation,OV.methylation,OV.methylation1,OV.methylation2,READ.methylation,STAD.methylation,STES.methylation,UCEC.methylation -> methylation.html [ FAIL ]
REDIRECT:topic COAD.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic COADREAD.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic GBM.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic GBMLGG.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic KIPAN.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic KIRC.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic KIRP.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic LAML.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic LUAD.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic LUSC.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic OV.methylation1 -> methylation.html [ SUCCESS ]
REDIRECT:topic OV.methylation2 -> methylation.html [ SUCCESS ]
REDIRECT:topic READ.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic STAD.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic STES.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic UCEC.methylation -> methylation.html [ SUCCESS ]
REDIRECT:topic methylation -> methylation.html [ SUCCESS ]
finding level-2 HTML links ... done
Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/RTCGA.methylation.buildbin-libdir/00LOCK-RTCGA.methylation/00new/RTCGA.methylation/help/BRCA.methylation,COAD.methylation,COADREAD.methylation,GBM.methylation,GBMLGG.methylation,KIPAN.methylation,KIRC.methylation,KIRP.methylation,LAML.methylation,LUAD.methylation,LUSC.methylation,OV.methylation,OV.methylation1,OV.methylation2,READ.methylation,STAD.methylation,STES.methylation,UCEC.methylation.html': No such file or directory
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RTCGA.methylation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA.methylation' as RTCGA.methylation_1.19.0.zip
* DONE (RTCGA.methylation)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'RTCGA.methylation' successfully unpacked and MD5 sums checked
|
RTCGA.methylation.Rcheck/examples_i386/RTCGA.methylation-Ex.timings
|
RTCGA.methylation.Rcheck/examples_x64/RTCGA.methylation-Ex.timings
|