Back to Multiple platform build/check report for BioC 3.13 experimental data
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

INSTALL report for RTCGA.mRNA on riesling1

This page was generated on 2021-01-14 15:59:11 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE RTCGA.mRNA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 314/385HostnameOS / ArchINSTALLBUILDCHECK
RTCGA.mRNA 1.19.0
Marcin Kosinski
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/RTCGA.mRNA
Branch: master
Last Commit: 7a968a0
Last Changed Date: 2020-10-27 10:16:52 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  OK 

Summary

Package: RTCGA.mRNA
Version: 1.19.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.mRNA_1.19.0.tar.gz && rm -rf RTCGA.mRNA.buildbin-libdir && mkdir RTCGA.mRNA.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.mRNA.buildbin-libdir RTCGA.mRNA_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.mRNA_1.19.0.zip && rm RTCGA.mRNA_1.19.0.tar.gz RTCGA.mRNA_1.19.0.zip
StartedAt: 2021-01-14 10:17:23 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 10:18:41 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 77.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.mRNA_1.19.0.tar.gz && rm -rf RTCGA.mRNA.buildbin-libdir && mkdir RTCGA.mRNA.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.mRNA.buildbin-libdir RTCGA.mRNA_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.mRNA_1.19.0.zip && rm RTCGA.mRNA_1.19.0.tar.gz RTCGA.mRNA_1.19.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 31 84.9M   31 26.5M    0     0  27.1M      0  0:00:03 --:--:--  0:00:03 27.1M
 97 84.9M   97 83.0M    0     0  41.9M      0  0:00:02  0:00:01  0:00:01 41.9M
100 84.9M  100 84.9M    0     0  42.1M      0  0:00:02  0:00:02 --:--:-- 42.1M

install for i386

* installing *source* package 'RTCGA.mRNA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RTCGA.mRNA'
    finding HTML links ... done
    mRNA                                    html  
REDIRECT:topic	 BRCA.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 BRCA.mRNA,COAD.mRNA,COADREAD.mRNA,GBMLGG.mRNA,KIPAN.mRNA,KIRC.mRNA,KIRP.mRNA,LGG.mRNA,LUAD.mRNA,LUSC.mRNA,OV.mRNA,READ.mRNA,UCEC.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 COAD.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 COADREAD.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 GBMLGG.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 KIPAN.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 KIRC.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 KIRP.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 LGG.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 LUAD.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 LUSC.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 OV.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 READ.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 UCEC.mRNA -> mRNA.html [ SUCCESS ]
REDIRECT:topic	 mRNA -> mRNA.html [ SUCCESS ]
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RTCGA.mRNA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA.mRNA' as RTCGA.mRNA_1.19.0.zip
* DONE (RTCGA.mRNA)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'RTCGA.mRNA' successfully unpacked and MD5 sums checked