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INSTALL report for RTCGA.clinical on riesling1

This page was generated on 2021-01-14 15:59:11 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE RTCGA.clinical PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 310/385HostnameOS / ArchINSTALLBUILDCHECK
RTCGA.clinical 20151101.21.0
Marcin Kosinski
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/RTCGA.clinical
Branch: master
Last Commit: c14e85c
Last Changed Date: 2020-10-27 10:13:45 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  WARNINGS 

Summary

Package: RTCGA.clinical
Version: 20151101.21.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.clinical_20151101.21.0.tar.gz && rm -rf RTCGA.clinical.buildbin-libdir && mkdir RTCGA.clinical.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.clinical.buildbin-libdir RTCGA.clinical_20151101.21.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.clinical_20151101.21.0.zip && rm RTCGA.clinical_20151101.21.0.tar.gz RTCGA.clinical_20151101.21.0.zip
StartedAt: 2021-01-14 10:17:17 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 10:18:01 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 43.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RTCGA.clinical_20151101.21.0.tar.gz && rm -rf RTCGA.clinical.buildbin-libdir && mkdir RTCGA.clinical.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.clinical.buildbin-libdir RTCGA.clinical_20151101.21.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGA.clinical_20151101.21.0.zip && rm RTCGA.clinical_20151101.21.0.tar.gz RTCGA.clinical_20151101.21.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 13.9M  100 13.9M    0     0  34.1M      0 --:--:-- --:--:-- --:--:-- 34.2M

install for i386

* installing *source* package 'RTCGA.clinical' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RTCGA.clinical'
    finding HTML links ... done
    clinical                                html  
REDIRECT:topic	 ACC.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 ACC.clinical,BLCA.clinical,BRCA.clinical,CESC.clinical,CHOL.clinical,COAD.clinical,COADREAD.clinical,DLBC.clinical,ESCA.clinical,FPPP.clinical,GBM.clinical,GBMLGG.clinical,HNSC.clinical,KICH.clinical,KIPAN.clinical,KIRC.clinical,KIRP.clinical,LAML.clinical,LGG.clinical,LIHC.clinical,LUAD.clinical,LUSC.clinical,MESO.clinical,OV.clinical,PAAD.clinical,PCPG.clinical,PRAD.clinical,READ.clinical,SARC.clinical,SKCM.clinical,STAD.clinical,STES.clinical,TGCT.clinical,THCA.clinical,THYM.clinical,UCEC.clinical,UCS.clinical,UVM.clinical -> clinical.html [ FAIL ]
REDIRECT:topic	 BLCA.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 BRCA.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 CESC.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 CHOL.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 COAD.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 COADREAD.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 DLBC.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 ESCA.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 FPPP.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 GBM.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 GBMLGG.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 HNSC.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 KICH.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 KIPAN.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 KIRC.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 KIRP.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 LAML.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 LGG.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 LIHC.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 LUAD.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 LUSC.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 MESO.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 OV.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 PAAD.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 PCPG.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 PRAD.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 READ.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 SARC.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 SKCM.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 STAD.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 STES.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 TGCT.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 THCA.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 THYM.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 UCEC.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 UCS.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 UVM.clinical -> clinical.html [ SUCCESS ]
REDIRECT:topic	 clinical -> clinical.html [ SUCCESS ]
    finding level-2 HTML links ... done

Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/RTCGA.clinical.buildbin-libdir/00LOCK-RTCGA.clinical/00new/RTCGA.clinical/help/ACC.clinical,BLCA.clinical,BRCA.clinical,CESC.clinical,CHOL.clinical,COAD.clinical,COADREAD.clinical,DLBC.clinical,ESCA.clinical,FPPP.clinical,GBM.clinical,GBMLGG.clinical,HNSC.clinical,KICH.clinical,KIPAN.clinical,KIRC.clinical,KIRP.clinical,LAML.clinical,LGG.clinical,LIHC.clinical,LUAD.clinical,LUSC.clinical,MESO.clinical,OV.clinical,PAAD.clinical,PCPG.clinical,PRAD.clinical,READ.clinical,SARC.clinical,SKCM.clinical,STAD.clinical,STES.clinical,TGCT.clinical,THCA.clinical,THYM.clinical,UCEC.clinical,UCS.clinical,UVM.clinical.html': No such file or directory
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RTCGA.clinical' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA.clinical' as RTCGA.clinical_20151101.21.0.zip
* DONE (RTCGA.clinical)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'RTCGA.clinical' successfully unpacked and MD5 sums checked